Gene detail

Gene detail information of Glyur000523s00021969.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G18520.1	2.00E-179	histone deacetylase 15
NR	XP_004508570.1	0	PREDICTED: histone deacetylase 15-like [Cicer arietinum]
COG	YP_462208.1	2.00E-75	histone deacetylase family protein [Syntrophus aciditrophicus SB]
Swissprot	tr\|Q8GXJ1\|HDA15_ARATH	0	Histone deacetylase 15
trEMBL	tr\|A0A072UQH9\|A0A072UQH9_MEDTR	0	Histone deacetylase superfamily protein {ECO:0000313\|EMBL:KEH32089.1}

Sequence

Transcript Sequence

>Glyur000523s00021969.1
ATCGCTTTTCCCTTGGTGCCCTAAAACCACGGCGCATTTTCGCACAGTGAGTCACTGCCGGTCAAAACCGCTAACTGGTAACTCTCCCTCTCTCTAATTCTCCATCTCTCTGCTCCCATTTCCCTCTTTTTTTCACTGTCTTTGCAAATTGCAAAAAATCTNCTGAGCTACAATCACAATTACCCATCCAGATCTCATTTTCAATCCTTGTTCCCTAATCCCTAACCCATCTTCNTCTTTTTCTCTCTCCTCCAATTACTAGTTGGTTGCAACAGCTTCTTTCGTAAAAGGAATTGTGGTAACTGCTAGGTTTTTTGTTAATATATTGATGGGTAGCGGTAGCGGAGCACTTGAAATGAATTGTATAACAAATAGGGAAGCTGAGAACAGTCTTCACAAGCAAGCTGATGAAGCTCCTGCTGAAGGGTTCATGGGAAGAGGCCAAAACTTGCTTTCTGACCCCAATGATGCAGTTGCTGTTGCTGCTGCTGCTGCAGACTCTGGGGAGCTGTCACACTCACACACCCTTCAACTTGAAGCCAAGGCACAGCCTGATGCCAAAAGGGCCAGGCTGCAGAAGGAACTGACTTTTCAGGACTTGTATCAAAACCAAAACATGTTTGACGACGACGACGANGAGGACAGTGATTGGGAGCCGTTTCAGTTTCAGAATTGCATGGAATTCACCAAGTGGTTCTGCAAAAATTGTACTATGGTTAACGTAGGCAATGTTGTCTATTGCGAAGTATGTGGGGAGCATAAAGAATCTAAAATCCTGAGCTATGGGTATTTTGCATCTCCCTTTGCACAAGATGAAGATCTGACTGAGATCCAGCCAAATGCAAAAGGACTGACAGATGTTGACTCACAGGNATCAGCGGCGAACAGTTCTACGGCAATCGGCTTTGATGAGAGAATGTTGTTACATGCAGAAGTTGAAATGAAATCACATCCACACCCTGAAAGGCCAGATCGACTTCGAGCAATTGCTGCTAGTCTTTCTAGAGCTGGTATATTTCCTGGAAGATGCCATCCAGTTCCTGCTAGAGAAATCACTCAAGAAGAACTTATGATGGTTCATACTTCGGAGCATATTGAATCTGTGGAAGCTACGAGCGAGTTAATGTCTAGTTATTTCACTCCTGACACATATGCCAATGAGCATTCGGCACGTGCTGCTAGGTTAGCAGCTGGATTATGTGCTGATCTGGCATCAGCAATTGTTTCTGGGCGTTCCAAAAATGGATTTGCTTTGGTTAGACCTCCTGGTCATCATGCTGGTGTAAGGCATGCGATGGGGTTTTGCCTTCACAATAATGCTGCAGTGGCAGCATTGGCAGCTCAGGCTGCAGGGGCTAAGAAGGTGCTAATTTTAGATTGGGATGTTCATCACGGAAATGGGACACAGGAAATATTTGAGCAAAACAAATCAGTCTTGTATATATCATTGCATAGACANGAGGGAGGTAATTTTTATCCCGGTACTGGAGCTGCCAATGAGGTTGGTAGTATGGGTGCAGAAGGATACTGTGTTAATATTCCGTGGAGCCAAGGAGGAATTGGTGATAATGATTACAGTTTTGCATTTCAGCATGTTGTCCTTCCGATAGCTTCTGAATTTGCTCCTGATTTCACCATAATATCAGCCGGATTTGATGCTGCTAGAGGTGATCCTCTAGGATGTTGTGATGTTACTCCCTCTGGCTATGCACAGATGACACACATGTTGACTGCACTTTCTGGTGGAAAATTGCTTGTTATTCTTGAGGGGGGCTATAATCTTCGATCTATATCATCTTCTGCAACTGCAGTAATCAAGGTATTGCTGGGTGAGAGTCCAGGATGTGAACTGGAAAATAGTTTCCCTACCAAATCAGGCCTGCAAACTGTTTTGGAAGTCCTCCAAATTCAGATGAATTTTTGGCCTTCCTTGGGACCTATCTTTATGAATTTGCAGTCACAATGGAGAATGCGCCNTCTTGTGAAAAAAAGCAAACAGACTAAGAAGAGACGTCGAGTTGTGGCACCAATGTGGTGGAGGTGGGGTCGAAAATGTTTCTTGTTCCATTTCCTGAATGGCCATCTTCGTGTAAAATCAAAATGATGATATTGAGCTGATGAATTTTGAAGTATAGGAATGCNTAGTAATTATCAGCATGTTGTATATATTCCATCTTTGTTCCAGACAATATAATTTTGCTTTGACCTTGCAAATGACAGATTTTTGTGGAATGTTGAGACAGAAATTGGGGAAGAAGGGGATCCTACCCGGNGTAGGGGGTGAAAGATAGAAGTAAAGGATAAAAATGGCTTCCCAGTTCCTTGTTTGAATATTTATAAGCTACCAAACATGGGAAAGTGAGAAATTAAATGAACTATATTATGAACTTTCAAGAGATATGGGGTGTTTAATTATCCTTTATTTTTTTTATCATCTCTCTGTTGTTTTAAATCCAAAAAAACTTCTAAACCAGTTNGTGGGATATCCAATATTTTGGTATGAATATATTTTCAACCTTGAATTATGTGCTGTTTTTGGGGCGTCGGGTCCTGAGGGGATTGATACAACATCCATCTGCTATGTCTCTACGGTCACGAAGCAGCTTTGAATGGAAACAAACAGATATATACACGTCTTATGCATNGCATCCATTAGATGAAATGAACTTTATTGAGCTATATATATGGATCTTGTCTGAAATAATTAGAGATTCTGACATTCCTTGCATGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00523	593	8665	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K11407	HDAC6	EC:3.5.1.98	Viral carcinogenesis	map05203
			Alcoholism	map05034

Gene Ontology

molecular_function
GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000523s00021969.1	PF00850.14	Hist_deacetyl	206	499	1.20E-93

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.244
SRR1783600	control	10.235
SRR1783602	moderate drought stress	9.901
SRR1811619	moderate drought stress	9.969

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.292
DRR006520	Root Summer glycyrrhizin high producing strain	19.119
DRR006521	Root Winter glycyrrhizin high producing strain	19.127
DRR006522	Root Winter glycyrrhizin high producing strain	18.559
DRR006523	Root Summer glycyrrhizin low producing strain	19.909
DRR006524	Root Summer glycyrrhizin low producing strain	20.030
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.815
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.191

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.648
SRR2868004	Drought Stress (root)	23.418
SRR2967015	Control (root)	27.566

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.431
SRR9715740	Leaf	12.533
SRR9715741	Leaf	13.928
SRR9715739	Root	3.941
SRR9715742	Root	9.604
SRR9715743	Root	8.836

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.050
SRR8749028	MeJA induced 9h	25.104
SRR8749029	MeJA induced 9h	17.309
SRR8749030	Uninduced	14.934
SRR8749031	Uninduced	11.916
SRR8749032	Uninduced	8.912

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.251
SRR8400027	Control - Root	21.253