Gene detail information of Glyur000522s00031203 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G44560.1 | 9.00E-06 | SNF7 family protein |
| NR | XP_004488205.1 | 4.43E-08 | PREDICTED: vacuolar protein sorting-associated protein 2 homolog 2-like [Cicer arietinum] |
| Swissprot | tr|Q0WTY4|VPS2B_ARATH | 5.00E-07 | Vacuolar protein sorting-associated protein 2 homolog 2 |
| trEMBL | tr|B7FHD8|B7FHD8_MEDTR | 1.00E-07 | Uncharacterized protein {ECO:0000313|EMBL:AFK45413.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00522 | 90266 | 95111 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.254 |
| SRR1783600 | control | 5.545 |
| SRR1783602 | moderate drought stress | 7.411 |
| SRR1811619 | moderate drought stress | 7.328 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.453 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.437 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.239 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.175 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.610 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.388 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.324 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.667 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.656 |
| SRR2868004 | Drought Stress (root) | 5.100 |
| SRR2967015 | Control (root) | 5.577 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.053 |
| SRR9715740 | Leaf | 3.307 |
| SRR9715741 | Leaf | 6.119 |
| SRR9715739 | Root | 0.351 |
| SRR9715742 | Root | 2.333 |
| SRR9715743 | Root | 1.822 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 44.129 |
| SRR8749028 | MeJA induced 9h | 22.693 |
| SRR8749029 | MeJA induced 9h | 42.009 |
| SRR8749030 | Uninduced | 20.894 |
| SRR8749031 | Uninduced | 14.993 |
| SRR8749032 | Uninduced | 11.139 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.900 |
| SRR8400027 | Control - Root | 14.299 |