Gene detail information of Glyur000522s00031201 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G44560.2 | 7.00E-54 | SNF7 family protein |
| NR | XP_004488205.1 | 1.35E-88 | PREDICTED: vacuolar protein sorting-associated protein 2 homolog 2-like [Cicer arietinum] |
| Swissprot | tr|Q0WTY4|VPS2B_ARATH | 2.00E-81 | Vacuolar protein sorting-associated protein 2 homolog 2 |
| trEMBL | tr|I1L219|I1L219_SOYBN | 2.00E-88 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G10020.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00522 | 75071 | 78297 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000522s00031201.1 | PF03357.16 | Snf7 | 2 | 123 | 4.30E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.644 |
| SRR1783600 | control | 17.077 |
| SRR1783602 | moderate drought stress | 20.229 |
| SRR1811619 | moderate drought stress | 20.240 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.575 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.395 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.137 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.884 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.359 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.182 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.350 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.515 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 37.489 |
| SRR2868004 | Drought Stress (root) | 19.461 |
| SRR2967015 | Control (root) | 25.430 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 17.983 |
| SRR9715740 | Leaf | 9.143 |
| SRR9715741 | Leaf | 18.330 |
| SRR9715739 | Root | 1.260 |
| SRR9715742 | Root | 4.250 |
| SRR9715743 | Root | 4.948 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 131.960 |
| SRR8749028 | MeJA induced 9h | 43.104 |
| SRR8749029 | MeJA induced 9h | 114.243 |
| SRR8749030 | Uninduced | 37.016 |
| SRR8749031 | Uninduced | 30.497 |
| SRR8749032 | Uninduced | 27.428 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 40.984 |
| SRR8400027 | Control - Root | 35.114 |