Gene detail

Gene detail information of Glyur000521s00021497.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G30200.1	3.00E-161	catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding
NR	XP_004500316.1	0	PREDICTED: malonyl-CoA-acyl carrier protein transacylase, mitochondrial-like [Cicer arietinum]
COG	YP_003370260.1	9.00E-103	malonyl CoA-acyl carrier protein transacylase [Pirellula staleyi DSM 6068]
trEMBL	tr\|G7J0N6\|G7J0N6_MEDTR	0	Malonyl CoA-acyl carrier transacylase {ECO:0000313\|EMBL:AES69554.2}

Sequence

Transcript Sequence

>Glyur000521s00021497.1
GTAGTTAGCCGGTTTCTTTGGTTTTGAAGACAAACTCTAATNACGTCTTGGTAAGCTCCGCCATCACAAAAACAAGCTATATAGCCAAATGCAAGCTTTCATTCACCATTCCCATTCCCATTCCCTTTCCCTTGTTCTTCGCAATCCTTCTTCTTCTGCTGCTGCTTCTCCTTCTTCTTCGCTTTCTGCAATGTCTTCCTCTCTCACTCTTCTCTCCTTTTCCCCCATCTTCGCCAATTCCCCACCTCGAAGACTCTCTCTCAGGAACCATCACCATCAACTTCCTCGATCTAGGGTTTTCGCGAGCCTCTCCACCGGATCTCAGGTCTCCCTCCACGATGCTTCCTTCGCCGATTACAAGGTCTCCAGTGCCTTTCTCTTCCCCGGCCAGGGTGCACAGACAGTTGGAATGGGAAAAGAAGCTCAGAATGTGCCTGCTGCTTTAGTTTTGTACAAGGCGGCTAATGAGATATTGGGGTTTGATCTTCTCGATGTATGCATCAACGGGCCGAAGGAAAAGCTAGATTCAACCGTTATCAGCCAGCCTGCCCTTTATGTCACTAGTCTTGCTGCTGTGGAGCTACTTCGTACNCGTGAGGGAGGTCAGCAGATTATTGACTCTGTTGATGTTGCATGTGGTTTAAGCCTAGGAGAATATACTGCTCTGGCATTTGCTGGGGCTTTCAGCTTTGAAGATGGACTCAAGTTGGTCAAACTGAGGGGTGAAGCCATGCAGGATGCTTCCGATGCTGCTAGAGGTGCCATGGTTAGTGTGATAGGAATAGACTCAGAGAAGGTCCAGCAATTGTGTGATGCAGCCAATCAGGAAGTGCCTGAAGCTGAGAAGGTTCAGATTGCCAATTACCTGTGTCCAGGAAACTATGCTGTCTCTGGAGGCATAAAAGGAATAGAAATGGTGGAAGCCAAGGCAAAGTCTTTCAAGGCTCGAATGACAGTGCGCCTAGCTGTTGCAGGTGCTTTCCATACCAGTTTCATGGAACCTGCTGTGTCAAGATTGGAAGCAGCATTGGCAGCAACAGAAATCAGAACCCCAAGAATACCAGTCATCTCCAACGTGAATGCACAGCCGCATGCTGATCCCGACACGATAAAGAAGATATTGGCACGACAGGTTACTTCCCCTGTTCAATGGGAAACAACAGTGAAGACTCTTCTAAACAAGGGACTGAAGAAAAGCTATGAACTGGGACCCGGAAAGGTTATTGCTGGAATTGTCAAGAGAATGGACAAAGGTGCTGATATTGAAAATGTAGGCGCTTAAGAAGGCCAAGGACCCTGCTCCTTCTGTGGGCATCCAATACAAACAACTAATTTTTTGTTTTTTTCATGAGAAATTGTGCGTGCGCTAAATCAAGAAAACGCAAGGAATTGAAGCTTCTGTAAGCAAAGAGCAGCATCAGTCATATTTGAGTGCCAGTTTTGAAGTTGTAATTTAATTCACCAATTGACACTATAATGAACAAGTTAGATCAGTGTTTGTTATCGGTGCTAGAATTTACAGTTTGTGTAATCTTAGATAATGTGATCCACCTGATCAACTCGACTGTGACACGGGGTTAATATCTATTCTAATTTTGTTCCAATAAAAATTAGAACAAACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00521	144254	148403	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00645	fabD	EC:2.3.1.39	Fatty acid metabolism	map01212
			Fatty acid biosynthesis	map00061

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0004314 [acyl-carrier-protein] S-malonyltransferase activity

GO:0016740 transferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000521s00021497.1	PF00698.16	Acyl_transf_1	96	373	2.20E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	42.905
SRR1783600	control	43.124
SRR1783602	moderate drought stress	22.493
SRR1811619	moderate drought stress	22.162

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.683
DRR006520	Root Summer glycyrrhizin high producing strain	31.173
DRR006521	Root Winter glycyrrhizin high producing strain	10.560
DRR006522	Root Winter glycyrrhizin high producing strain	10.566
DRR006523	Root Summer glycyrrhizin low producing strain	22.134
DRR006524	Root Summer glycyrrhizin low producing strain	22.216
DRR006525	Leaf Summer glycyrrhizin high producing strain	33.903
DRR006526	Leaf Summer glycyrrhizin high producing strain	33.759

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	63.899
SRR2868004	Drought Stress (root)	31.147
SRR2967015	Control (root)	29.807

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.677
SRR9715740	Leaf	22.682
SRR9715741	Leaf	18.777
SRR9715739	Root	14.525
SRR9715742	Root	21.892
SRR9715743	Root	20.038

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.570
SRR8749028	MeJA induced 9h	13.707
SRR8749029	MeJA induced 9h	8.194
SRR8749030	Uninduced	16.566
SRR8749031	Uninduced	5.543
SRR8749032	Uninduced	2.798

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	66.323
SRR8400027	Control - Root	69.194