Gene detail information of Glyur000521s00021491 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_008231866.1 | 2.10E-13 | PREDICTED: PRA1 family protein B1-like [Prunus mume] |
| Swissprot | tr|Q9M012|PR1B5_ARATH | 2.00E-10 | PRA1 family protein B5 |
| trEMBL | tr|M5W015|M5W015_PRUPE | 8.00E-14 | Uncharacterized protein {ECO:0000313|EMBL:EMJ07072.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00521 | 101837 | 102222 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000521s00021491.1 | PF03208.14 | PRA1 | 19 | 75 | 4.10E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.297 |
| SRR1783600 | control | 0.242 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.115 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.672 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.569 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.382 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.854 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.739 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.088 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.470 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.327 |
| SRR2868004 | Drought Stress (root) | 0.599 |
| SRR2967015 | Control (root) | 0.150 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.952 |
| SRR9715740 | Leaf | 4.523 |
| SRR9715741 | Leaf | 2.562 |
| SRR9715739 | Root | 7.753 |
| SRR9715742 | Root | 5.759 |
| SRR9715743 | Root | 6.557 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.144 |
| SRR8400027 | Control - Root | 3.267 |