Gene detail

Gene detail information of Glyur000521s00021477

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G38400.1	0	alanine:glyoxylate aminotransferase 3
NR	XP_004500335.1	0	PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial-like [Cicer arietinum]
COG	YP_001817512.1	9.00E-150	class III aminotransferase [Opitutus terrae PB90-1]
Swissprot	tr\|Q94AL9\|AGT22_ARATH	0	Alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial (Precursor)
trEMBL	tr\|A0A072UX79\|A0A072UX79_MEDTR	0	Alanine-glyoxylate aminotransferase-like protein {ECO:0000313\|EMBL:KEH34394.1}

Sequence

Transcript Sequence

>Glyur000521s00021477.1
ATGAACATGAAGCCACAACAACAACTCTGTAAGCGAGCTGTGTGGGACAAAATTTGTGGGTGGCAGCGCCGTGTGTTCTCCTCCACCATAGATCCAATCAATGAAGAAGATGGTGTTAATTTGCTTCCTANAATGCCACACTTCAGTCATACTCCATCTCCTTACAAAGGGCCTTCAGCATCTGATCTCTTGAAGAGGAGAAAGCAGTATCTCCCCACGTGCGCTGGCCCCTATTACACCCACCCAGTAAGNAGTTTTCATCTCCATAAAGAGTGNTCTTTAAATCTGGTGGAGGGTAAAATGCAATACCTGTATGATGAAAAGGGTCGTAGGTACCTTGATGCCTTTGGTGGCATAGCCACTGTTTCATGTGGACATTGCCACCCTGATGTTGTTGAAGCAATTGTTAACCAGACTAGGCTCTTGCAGCATACCACTGTCCTCTATTTGAACCATGCTATTGTTGATTTTGCTGAGGCACTTGCTGCTAAGATGCCAGGGGAACTGAAGGCTGTTTTCTTTACAAATTCTGGGACAGAAGCCAATGAGCTGGCTCTGATGATGGCCCGGCTGTACACTGGTTACCATGATATAATTTCCATCAGAAATGGCTACCATGGCAATGCAACCTCAACAATGGGTGCCACTGCTCAGTTTTTTCACAAGTTTAATGTTGTACAGACTGGAAGTCACCATGCCCTTAACCCNGACCCTTACAGAGGAGTTTTTGGTTCTGATGGAGCAAAATATGCNAATGATGTTCAAGGCATAATTGATTATGGAACTTGTGGTCATGCAGCTGCCTTTATTGCTGAGGCCATTCAGGGAGTGGGTGGAGTGATAGAATTAGCTCCAGGTTACTTGCCCGCAGTTTATAGCATCATAAAAAAAGCAGGAGGTCTCTTCATAGCTGATGAGGTTCAGACAGGGTTTGGTCGAACTGGTAGTCACTTTTGGGGCTTTGAGGCACATGGTATTGTCCCTGATATTGTAACAATGGCAAAGGGAATTGGTAATGGTGCACCGATTGGTGCTGTTGTCACAACTCCTGAGATTGCAAAGGTCTTGACTTATGGCTACTACTTTAGCACATTTGGGGGAAATCTTGTTTCCACTGCTGCTGGATTAGCTGTTTTGAATGTAATTGAGAAGGATCAGCTTCAGCAAAATGCATTTGTTGTTGGATCATATTTAAAGGAGCGTCTTAATTCACTAATGGAAAAGCATGAGAGTNAGCTTCTTTTCTCTTTCCATTTTTGGTTTGTGGCTTGGGAATCTATTTGGAGTTTGATTTCTAACATAGTTTTTTTGTCAGTAATTGGGGATGTAAGGGGAAAGGGAATGTTGCTTGCAGTTGAACTTGTCAAAGATCGGCAATTGAAAACTCCTGCAAAAGTTGAAATGCTGCAGATCCTTGAACAGATGAAAGATATGGGAGTGCTAGTTGGGAAAGGTGGCTTTCATGGAAANGTTTTAAGGATTACACCCCCACTTTGCTTCACTAAGGAAGATGCAGATTTTCTTATAGATGTGGTGGACTACATAATGTCAAAGATGTGAAGCCTAGGCAGTACTCTTGGATGAAGAACATGTTCCAACTCTGATGTAAAAGCAAAATTAATAATTTTCTTTTGGGTTGCCCCACTATTAGGCATGGTCTGCTCTGTGCAACCTAATGTTAATACAGAAATTCACNAGTGTACTATTGGGGGAAGCCAACGTAGTATAGTGACTTGGGAGAACATATAATCATAGAAATAAAGCGTGTGGAGACCTGAGAAGTCATGATCTTGTATCAAGAATTTGCTTGACCATAAAACTATTAGTTAGTTAGTTCGTTAGGCAACTAAAATGGTCCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00521	35279	38253	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00827	AGXT2	EC:2.6.1.44 2.6.1.40	Alanine, aspartate and glutamate metabolism	map00250
			Glycine, serine and threonine metabolism	map00260
			Cysteine and methionine metabolism	map00270
			Valine, leucine and isoleucine degradation	map00280

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0008483 transaminase activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000521s00021477.1	PF00202.16	Aminotran_3	98	410	1.90E-79

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.988
SRR1783600	control	7.977
SRR1783602	moderate drought stress	7.536
SRR1811619	moderate drought stress	7.561

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.618
DRR006520	Root Summer glycyrrhizin high producing strain	11.149
DRR006521	Root Winter glycyrrhizin high producing strain	0.179
DRR006522	Root Winter glycyrrhizin high producing strain	0.116
DRR006523	Root Summer glycyrrhizin low producing strain	6.683
DRR006524	Root Summer glycyrrhizin low producing strain	6.670
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.046
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.049

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.878
SRR2868004	Drought Stress (root)	2.354
SRR2967015	Control (root)	4.401

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.517
SRR9715740	Leaf	0.068
SRR9715741	Leaf	0.431
SRR9715739	Root	3.084
SRR9715742	Root	4.900
SRR9715743	Root	5.900

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.355
SRR8749028	MeJA induced 9h	0.175
SRR8749029	MeJA induced 9h	0.289
SRR8749030	Uninduced	0.479
SRR8749031	Uninduced	0.027
SRR8749032	Uninduced	0.180

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.618
SRR8400027	Control - Root	7.410