Gene detail information of Glyur000520s00025574 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G67900.3 | 0 | Phototropic-responsive NPH3 family protein |
| NR | XP_007153783.1 | 0 | hypothetical protein PHAVU_003G064600g [Phaseolus vulgaris] |
| Swissprot | tr|Q9C9V6|Y1790_ARATH | 0 | BTB/POZ domain-containing protein At1g67900 |
| trEMBL | tr|V7C6I9|V7C6I9_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW25777.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00520 | 109495 | 112657 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000520s00025574.1 | PF03000.9 | NPH3 | 214 | 508 | 1.80E-93 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.792 |
| SRR1783600 | control | 0.834 |
| SRR1783602 | moderate drought stress | 1.259 |
| SRR1811619 | moderate drought stress | 1.177 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.953 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.924 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.168 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.165 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.550 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.592 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.219 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.326 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.849 |
| SRR2868004 | Drought Stress (root) | 3.687 |
| SRR2967015 | Control (root) | 6.415 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.314 |
| SRR9715740 | Leaf | 0.942 |
| SRR9715741 | Leaf | 1.632 |
| SRR9715739 | Root | 0.726 |
| SRR9715742 | Root | 4.166 |
| SRR9715743 | Root | 4.344 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.032 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.024 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.757 |
| SRR8400027 | Control - Root | 5.166 |