Gene detail information of Glyur000520s00025571 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G10490.1 | 1.00E-13 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| NR | AFK44098.1 | 1.71E-53 | unknown [Lotus japonicus] |
| COG | YP_003187806.1 | 9.00E-07 | 2OG-Fe(II) oxygenase [Acetobacter pasteurianus IFO 3283-01] |
| Swissprot | tr|Q9M547|FLS_EUSER | 4.00E-12 | Flavonol synthase/flavanone 3-hydroxylase |
| trEMBL | tr|I3SV06|I3SV06_LOTJA | 6.00E-54 | Uncharacterized protein {ECO:0000313|EMBL:AFK44098.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00520 | 71724 | 74037 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000520s00025571.1 | PF14226.1 | DIOX_N | 40 | 135 | 1.10E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.879 |
| SRR1783600 | control | 0.864 |
| SRR1783602 | moderate drought stress | 2.412 |
| SRR1811619 | moderate drought stress | 2.437 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.478 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.366 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.896 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.842 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.269 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.037 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.509 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.402 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.816 |
| SRR2868004 | Drought Stress (root) | 0.681 |
| SRR2967015 | Control (root) | 1.134 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.360 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.300 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.391 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.086 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.663 |
| SRR8400027 | Control - Root | 0.978 |