Gene detail information of Glyur000520s00025567.3 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G70630.1 | 1.00E-173 | Nucleotide-diphospho-sugar transferase family protein |
| NR | XP_003628944.1 | 0 | UDP-galactose:fucoside alpha-3-galactosyltransferase [Medicago truncatula] |
| Swissprot | tr|Q9M146|MGP4_ARATH | 1.00E-11 | UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 |
| trEMBL | tr|K7L9G0|K7L9G0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G38866.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00520 | 48097 | 62994 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT77 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000520s00025567.3 | PF03407.11 | Nucleotid_trans | 1390 | 1610 | 5.40E-43 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.590 |
| SRR1783600 | control | 10.481 |
| SRR1783602 | moderate drought stress | 14.985 |
| SRR1811619 | moderate drought stress | 14.980 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.060 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.929 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.406 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.278 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.747 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.647 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.005 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.985 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.080 |
| SRR2868004 | Drought Stress (root) | 16.630 |
| SRR2967015 | Control (root) | 17.294 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.603 |
| SRR9715740 | Leaf | 7.937 |
| SRR9715741 | Leaf | 8.330 |
| SRR9715739 | Root | 0.587 |
| SRR9715742 | Root | 7.458 |
| SRR9715743 | Root | 6.030 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 34.374 |
| SRR8749028 | MeJA induced 9h | 42.101 |
| SRR8749029 | MeJA induced 9h | 25.082 |
| SRR8749030 | Uninduced | 28.096 |
| SRR8749031 | Uninduced | 13.932 |
| SRR8749032 | Uninduced | 15.119 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.824 |
| SRR8400027 | Control - Root | 13.134 |