Gene detail

Gene detail information of Glyur000520s00025562

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G12950.1	1.00E-81	root hair specific 2
NR	CAN68575.1	1.39E-167	hypothetical protein VITISV_033685 [Vitis vinifera]
Swissprot	tr\|Q9LYT3\|TT12_ARATH	1.00E-56	Protein TRANSPARENT TESTA 12
trEMBL	tr\|A5C2M2\|A5C2M2_VITVI	5.00E-168	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}

Sequence

Transcript Sequence

>Glyur000520s00025562.1
CTTTGGATGTATAATAGCATTTGCGTGCTTTACTATAAACCATAACATTTAAGTGTTTAAAAATCTTTTTTCTTTCTTTATATATACATCAGAAATGAGAATGGAGAATGTGAATGGGAATTTCCTATTTCCTATTTCGAGAATTTTCACTCTATTAGATGAGCATGGAAGAAGACAATAATAACGAACACACTCAACCGCTTCTCACCCCGCTGCACCGCCAACAACAACAACAACAACACGACCACCATCACACTCACTCTCACCACCTGCCACTAGACAGTAGTACTGCAGCTGCAGTATTCACCGCCGAATCCCATGACATCCCTCCGATCGCCGGCGCCGGAGACTTCACCAGAGAGTTCCTCATCGAGTCAAAGAAGCTCTGGTACCTCGCCGGCCCCGCCATCTTCACCTCCATCTGCCAGTACTCCCTCGGCTCCATCACTCAGGTCTTCGCCGGCCACGTCGGCACTCTCCAACTCGCCGCCGTCTCCGTCGAAAACTCCGTCATCGCCGGCTTCTGCTTAGGCATCACGTTTGGGATGGGAAGCGCGTTGGAGACGCTATGCGGGCAAGCGTTTGGAACAGGACAAATTGAGATGTTAGGGATCGTGGGTGATTCTGAATGTAACTGCTCTGGTTCTGAGTCTTCTCTACGTTTTCGCGGAACCGCTTCTGAAGCTGATAGGGCAAACGGCGGCAATATCGGAGGCAGCGGGGGAGTTAGCACTGTGGATGATACCTCAGCTCTTCGCCTACGCCGTGAACTACCCAATCCAGAAGTTTTTGCAGGCGCAGAGCAGGATCATGGCGATGGCCTCGTTTATGTGTTGAGTGGGTCATGTGGTCAGGCTTGGACTGGGTTCTCATTTAAAGCCTTTCAGAATCTTTGGGGATTCGTTCGTCTCTCCCTTGCCTCTGCTGTTATGCTATGCCTTGAAGTATGGTATTTTATGGCGCTGATTCTGTTCGCTGGATATCTGAGGAATGCAGAAGTTTCAGTCGATGCCTTGTCTATCTGCACAAACATATTGGGGTGGACTATCATGATATCCTTTGGATTTAACGCAGCCGTAAGTGTGAGAGTGTCAAATGAACTGGGGGCATCTCACCCGAGAACAGCAAAATTTTCACTTGTGGTTGCTGTGATTACTGCATTTGTGATTGNTCTCTTGCTTTCGCTGGTTTTGCTCATCTCCTGGAAGCAGTACCCTTCCTTGTTTTCAAATGACCCAGAAGTGAAAGAGATAGTGATGGAGCTCACACCCCTGTTGGCCTTTTGCATTGTCATCAACACAGTTCAGCCTGTTCTTTCAGGGGTTGCCATTGGGGCAGGGTGGCAGACAGCTGTTGCTTATGGGATCTGGTCTGGAATGCTGTTAGGGACCATCCTACAAACTTGTGTTTTATTCTTCATGGTCTATAGAACTGACTGGAATAAAGAGGCATCCCTNGCGGATGAAAGGATAAAGAAGTGGGGTGGGCATAAAGATTCAAAAATGAATGGGAAGAATCATCAAGAAACAGGAAACGTGGGCAAACTGTAGCAGCTATTTTGTACCCCTATGTTATCGATTGAAGAAGAGTCTTTGCATGATTTTCATGTATTTGAATGGACGTTTATTTAAAGTGATTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00520	29055	39064	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006855 drug transmembrane transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0015238 drug transmembrane transporter activity

GO:0015297 antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000520s00025562.1	PF01554.13	MatE	82	152	1.60E-12
Glyur000520s00025562.1	PF01554.13	MatE	255	413	4.20E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	89.846
SRR1783600	control	88.277
SRR1783602	moderate drought stress	141.848
SRR1811619	moderate drought stress	136.928

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	317.044
DRR006520	Root Summer glycyrrhizin high producing strain	315.493
DRR006521	Root Winter glycyrrhizin high producing strain	17.219
DRR006522	Root Winter glycyrrhizin high producing strain	16.992
DRR006523	Root Summer glycyrrhizin low producing strain	44.638
DRR006524	Root Summer glycyrrhizin low producing strain	45.928
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.243
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.247

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	52.758
SRR2868004	Drought Stress (root)	38.492
SRR2967015	Control (root)	58.092

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.381
SRR9715740	Leaf	0.400
SRR9715741	Leaf	0.508
SRR9715739	Root	498.202
SRR9715742	Root	172.545
SRR9715743	Root	239.421

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.498
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.027
SRR8749030	Uninduced	0.025
SRR8749031	Uninduced	0.066
SRR8749032	Uninduced	0.064

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	179.451
SRR8400027	Control - Root	131.160