Gene detail

Gene detail information of Glyur000519s00019106.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G19250.1	0	flavin-dependent monooxygenase 1
NR	XP_003541317.1	0	PREDICTED: probable flavin-containing monooxygenase 1-like [Glycine max]
COG	YP_007059321.1	3.00E-63	K+ transport protein [Rivularia sp. PCC 7116]
Swissprot	tr\|Q9LMA1\|FMO1_ARATH	0	Probable flavin-containing monooxygenase 1
trEMBL	tr\|I1LY93\|I1LY93_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G17340.1}

Sequence

Transcript Sequence

>Glyur000519s00019106.1
ATGGCTATCGGTAGTGAAAACCACCATCCCAAAAAATTGGTTTCTAAAATTGGCATCATAGGAGGTGGAGTGAGTGGCATAGCAGCTGCCAAACAACTATCCCATCACAACCCTATTGTTTTTGAGGCCTCTGATTCCATTGGTGGGGTATGGAGGCATTGTGCTTTCAATTCCACAAGGCTTCAATCTCACCGCAGGGACTATGAATTCACTGATTTCCCTTGGCCTGATAGAGACAACCCTGATTTCCCTACCCACATGGAGGTGTTGGGTTACTTGCAATCATATGCGGAACACTTTGATGTGATCAAGAACATCAGGTTCAACTCTAAGGTGGTGGAAATCCGGTTCACCGGCAACCGGGAATCTTCCTCCTCCTCCGAGTTTGGAAGCCTACTTCCCGGTCAGCCTGTGTGGGAAGTTGCTGTGCAAACCAATCACTCAGATACCATTCAGTGGTACAGCTTCGAGTTTGTTGTGGTGTGCGTTGGGAAATATGGGGACATACCCAAGATTCCAGCGTTTCCACGCAAAAAGGGCCCTGAAGTGTTCAAGGGCAAGGTCCTGCATACGCTTGATTACNGTAAACTTGACCAAGAAGCTGCTACTGAACTTCTCAAGGGGAAAAATGTAGTGGTGGTCGGTTTCAAAAAGTCAGGACCTGAAGGGAAACCGTGCACCATGGTGATAAGGACTTTGCATTGGACAGTTCCCCATTACTGGATTTGGGGATTGCCATTTTTCTTATTCTACTCAACAAGATCTTCTCAGTTCTTCCACGAAAGACCAAACCAGGGCTTACTCAGAACCCTTCTCTGCTTAATGTTATCCCCAGTGAGGCATGGAATTTCAAAGTTCATTGAGTCCTACCTTCTGTGGAAACTACCATTGGAGAAGTATGGGTTGAAACCAGAACACCCCTTTGGGGAAGATTATGCATCTTGTCAAATGGCCATCATGCCAGAAAATTTCTTCTCTGAGGTTGAAAAGGGCAAAATTCTGTTTAAAAAAACATCAAAGTGGTGGTTCTGGAATGGAGGAATTGAGTTTGAGGATAACTCTAGAGTGGAGGCTGATGTAGTGGTCCTTGCAACTGGTTTTGATGGAAAGAAAAAGCTCAAAACCATTTTACCAGAACCTTTTTGTAGCCTGCTGGAATACCCTTCTGGTATTATGCCTTTATACAGGGGAACTATCCATCCATTGATTCCAAACATGGCCTTTGTGGGTTATGTTGAGAGCGTTTCGAATCTTCACTCTTCNGAGCTGCGCTCCATTTGGCTTTCTGGACTGATAGATGACAAATTCAAGCTTCCAAATGTCGAGAACATGCTTTCACAAACCCTTAAGGAGATGGAAGTAATGAAGAGGTCTACAAGGTTCTATAAGAGGCACTGCATTTCAACTTACAGCATCAACCATGGTGATGAGATATGTAAGGATATGGGGTGGAATTCCTGGAGGAAGAAGAACTGGATATCTGAAGTATTTGGCCCTTACAGTAGTCAAGACTATGAGAAGGAAGATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00519	104631	109946	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00485	FMO	EC:1.14.13.8	Drug metabolism - cytochrome P450	map00982

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0004499 N,N-dimethylaniline monooxygenase activity

GO:0016491 oxidoreductase activity

GO:0050660 flavin adenine dinucleotide binding

GO:0050661 NADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000519s00019106.1	PF00743.14	FMO-like	16	483	1.50E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.024
SRR1783602	moderate drought stress	0.049
SRR1811619	moderate drought stress	0.050

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.141
DRR006520	Root Summer glycyrrhizin high producing strain	0.105
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.288
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.906

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.242
SRR2868004	Drought Stress (root)	0.167
SRR2967015	Control (root)	0.240

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.318
SRR9715740	Leaf	0.205
SRR9715741	Leaf	0.152
SRR9715739	Root	0.002
SRR9715742	Root	0.017
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.014
SRR8749028	MeJA induced 9h	0.211
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.091
SRR8400027	Control - Root	0.067