Gene detail information of Glyur000519s00019105 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G26060.1 | 1.00E-75 | Thioredoxin superfamily protein |
| NR | XP_006600147.1 | 2.03E-115 | PREDICTED: uncharacterized protein LOC100500610 isoform X1 [Glycine max] |
| COG | YP_007127539.1 | 1.00E-58 | Peroxiredoxin [Gloeocapsa sp. PCC 7428] |
| Swissprot | tr|Q6QPJ6|PRXQ_POPJC | 2.00E-111 | Peroxiredoxin Q, chloroplastic (Precursor) |
| trEMBL | tr|I1MS47|I1MS47_SOYBN | 8.00E-116 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G05150.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00519 | 102478 | 104964 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000519s00019105.1 | PF00578.16 | AhpC-TSA | 77 | 198 | 1.10E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.529 |
| SRR1783600 | control | 5.545 |
| SRR1783602 | moderate drought stress | 4.023 |
| SRR1811619 | moderate drought stress | 4.074 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.983 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.897 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.317 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.376 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.782 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.779 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 136.793 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 134.869 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.844 |
| SRR2868004 | Drought Stress (root) | 13.160 |
| SRR2967015 | Control (root) | 5.272 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 86.966 |
| SRR9715740 | Leaf | 133.889 |
| SRR9715741 | Leaf | 43.204 |
| SRR9715739 | Root | 4.761 |
| SRR9715742 | Root | 3.838 |
| SRR9715743 | Root | 4.475 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.160 |
| SRR8749028 | MeJA induced 9h | 2.044 |
| SRR8749029 | MeJA induced 9h | 1.948 |
| SRR8749030 | Uninduced | 0.477 |
| SRR8749031 | Uninduced | 0.109 |
| SRR8749032 | Uninduced | 0.393 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.033 |
| SRR8400027 | Control - Root | 11.926 |