Gene detail information of Glyur000519s00019096 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G20820.1 | 8.00E-29 | SAUR-like auxin-responsive protein family |
| NR | XP_004508031.1 | 6.10E-68 | PREDICTED: uncharacterized protein LOC101493674 [Cicer arietinum] |
| trEMBL | tr|I1LYA1|I1LYA1_SOYBN | 1.00E-63 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G17400.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00519 | 73653 | 74039 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000519s00019096.1 | PF02519.9 | Auxin_inducible | 34 | 110 | 8.60E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.095 |
| SRR1783600 | control | 18.300 |
| SRR1783602 | moderate drought stress | 2.491 |
| SRR1811619 | moderate drought stress | 2.721 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.243 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.272 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.418 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.528 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.009 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.179 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.977 |
| SRR2868004 | Drought Stress (root) | 14.517 |
| SRR2967015 | Control (root) | 10.674 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.128 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.827 |
| SRR9715739 | Root | 0.809 |
| SRR9715742 | Root | 2.028 |
| SRR9715743 | Root | 0.635 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.379 |
| SRR8749028 | MeJA induced 9h | 0.584 |
| SRR8749029 | MeJA induced 9h | 0.620 |
| SRR8749030 | Uninduced | 0.953 |
| SRR8749031 | Uninduced | 1.873 |
| SRR8749032 | Uninduced | 0.570 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.626 |
| SRR8400027 | Control - Root | 4.119 |