Gene detail

Gene detail information of Glyur000519s00019089

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G43210.1	ATP binding microtubule motor family protein
NR	XP_004508036.1	PREDICTED: centromere-associated protein E-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q8LNZ2\|NACK2_ARATH	Kinesin-like protein NACK2
trEMBL	tr\|I1LYA3\|I1LYA3_SOYBN	Kinesin-like protein {ECO:0000256\|RuleBase:RU000394}

Sequence

Transcript Sequence

>Glyur000519s00019089.1
ATGGTGGGAACACCGGGAGTGGCAACACCATCGTCTAAGATGCAGAGGAATCTGTCCGGTACTCCCGGTGGTGCCAAAATCCGGGAGGAGAAAATTCGAGTTACGGTTCGGATGAGGCCACTCAACAGGAAGGAACAAGCCATGTACGATCTAATTGCTTGGGATTGCTTGAATGAGCACACCATTGTGTTCAAGAATCCAAATCAAGAGAGGCCCGCACCGCCATACACCTTCGATAGAGTGTTTGCTCCTGCATGCTCAACTCAGAGGGTTTATGAAGAAGGGGCTAAAGATGTTGCTTTATCAGCACTTTCTGGGATCAATGCAACAATTTTTGCTTATGGGCAGACTAGCAGTGGTAAGACATTCACGATGAAAGGCATCACTGAAAATGCTATTAAGGACATCTATGAGTACATCAAGAATACACCAGAAAGGGATTTTATTTTGAGGCTCTCTGCTTTGGAAATCTATAATGAAACTGTCATAGACCTTCTAAATCGTGAATCTGGTCATCTTCGGCTTTTGGATGATCCTGAGAAAGGGACTATTGTGGAAAAGCTGAATGAAGAAGTAGCTAAGGATGGTCAACATCTAAGGCATTTAATTGGCATCTGTGAAGCTCAAAGGCAAGTGGGGGAAACTGCTTTAAATGATAAAAGCTCAAGATCACATCAAATAATCAGGCTGACTGTAGAGAGCTACCTTCGTGAAAGTTCAGGCCATATAAAGTCTTACATAGCCAGTTTGAATTTTGTGGATCTTGCCGGAAGTGAACGCATCTCTCAAACTAATACATGTGGAGCAAGATTGAAGGAAGGCAGCCACATAAACCGAAGTTTATTGACACTTGCATCAGTCATCAGGAAGCTAAGTGGTGGAAAACATGGTCACATACCATATAGAGATTCAAAACTGACACGAATATTGCAGTCTTCACTTGGGGGGAATGCTCGAACAGCGATTATATGCACCATAAGTCCATCCTTAAGTCATGTAGAGCAAACAAGAAATACACTATCATTTGCTACCAGTGCAAAGGAAGTCATTAACAGTGCCCGAGTGAATATGGTTGTTTCAGATAAGACACTAGTTAAACAACTGCAAAAGGAAGTTGCAAGGCTTGAAGGAGAGTTAAGAAGCCCTGATCTGTCTTCACATGCATGTCTAAGGTCATTGCTAGCTGAAAAAGAGTTGAAAATTCAGCAGATGGAAAAGGATATGGAAGACCTGAGGCGACAGAGAGACCTTGCACAATCTCAACTTGATCTTGAAAGAAGAGCAACTAAAGTTCAGAAGGGATCAAATGATTACGGTCCCTCTAGTCAAGTCGTCAGATGTCTTTCTTTTCCCGAGGAAAATGAATCGGCTATTGTTAAACATACTCCAGAGCGAAGGCAAGCAGTAGGCAGGCAGGCAATGCTGAAGAATTTAGTGGCTTCTCCTGATCCATTGATACTGGTAGATGAAATTCGAAAGCTTGAAAATCGGCAGCTGCAACTCTGTGAGGATGCAAATCGAGCACTTGAAGTTCTGCACAAGGATTTTACAACCCATAAACTTGGAAATCAAGAAACAGCTGAAACCATGTCGAAAGTACTGTCTGAAATAAAANACTTGGTAGCTGCTAGCTCTACTGCAGAAGAAATCGTGAATGCAGATAAGGCCAACCTGATGGAAAAGATCACTCAGTTGAACTATCAAGGGAACACCATTGCATCTTTAGAAAGGAAGCTGGAGAATGTTCAAAAATCTATAGACAAGCTGGTCTCTGCTTTTGGTACCGAGGAGANTCCAGAGAGCAAGACCCAGCTGAGAAGGAAGAAAATTCTTCCTTTCACCTTAAGCAACAGTCCCAACATGCAACATATAATACGTGCTCCTTGCTCGCCTCTCTCTTCTTCTCGTAAGGCAATGGAACATGAAATTGAGAACAGGGCACCCCAGAACAATATTTCCTTCCCTGGCAGTAATACTTTTGCAAGGTTACATAAAGATACTCNGCGAAAGGATGATGAAAGTTGTGATTCTATTCTATCACGGGAAGGAAGCCCTGCTTCGCGGCAATCAAAATCGGTGAATGTGAAGAAGATTCAGAAAATGTTCAAGAATGCTGCTGAGGAGAACATTCGGAGCTTCAGAGTTTATGTTACTGAGTTAAAAGAGCTAGTGGCTAAACTGCATTACCAGAAGCAGCTTCTGGTTTGCCAGGTTTTGGAGCTTGAAGCAAACAAGTCTGTCAATGAAGAAATGGATACAACTGATCGATCTCCCTTATCATGGCACATACTATTCGAACAGCATAGAAAGCAAATTATCATGTTATGGCATTTATGCCACATTTCTCTCGTGCACCGAACACAGTTTTATCTTTTGTTAAGGGGGGATCCTTCTGATCAGGTATATATGGAAGTTGAACTTAGAAGATTGACTTGGTTGGAACTGCATCTGGCAGAGCTTGGGAATGCTAGTCCTGCTCTTCTAGGTGATGAGCCTGCAGGCTCTGTCTCTGCAAGCATTAGAGCCCTGAAGCAAGAAAGGGAGTATCTAGCCAAGAGGGTGAACTCTAAACTTACCGCAGAGGAGAGGGAACTACTTTATGCAAAATGGGAAGTTCCTCCGGTNGGAAAACAAAGGAGGCTGCAGTTTGTGAATAAATTGTGGACTGACCCTTATAACATGCAACATGTACAAGAAAGTGCCGAAATTGTAGCAAAGCTCATTGATTTCTGTGTATCTGATGAAAATAGCAAGGACATGTTTGAATTAAACTTTGCAAGCCCTTATAATAAGAAAGCATGGGTNGGCTGGAACTTTATATCAAATCTTTTAAATTTGTGAACACAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00519	18339	24263	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007018 microtubule-based movement

cellular_component
GO:0005871 kinesin complex

molecular_function

GO:0003777 microtubule motor activity

GO:0005524 ATP binding

GO:0008017 microtubule binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000519s00019089.1	PF00225.18	Kinesin	37	349	1.30E-96
Glyur000519s00019089.1	PF11995.3	DUF3490	765	928	2.80E-67

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.632
SRR1783600	control	1.637
SRR1783602	moderate drought stress	3.136
SRR1811619	moderate drought stress	3.112

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.796
DRR006520	Root Summer glycyrrhizin high producing strain	3.816
DRR006521	Root Winter glycyrrhizin high producing strain	0.506
DRR006522	Root Winter glycyrrhizin high producing strain	0.458
DRR006523	Root Summer glycyrrhizin low producing strain	1.211
DRR006524	Root Summer glycyrrhizin low producing strain	1.339
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.842
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.918

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.676
SRR2868004	Drought Stress (root)	3.321
SRR2967015	Control (root)	4.916

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.289
SRR9715740	Leaf	0.647
SRR9715741	Leaf	0.805
SRR9715739	Root	0.416
SRR9715742	Root	0.464
SRR9715743	Root	0.356

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.842
SRR8749028	MeJA induced 9h	12.521
SRR8749029	MeJA induced 9h	7.308
SRR8749030	Uninduced	0.357
SRR8749031	Uninduced	0.134
SRR8749032	Uninduced	0.239

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.876
SRR8400027	Control - Root	4.454