Gene detail information of Glyur000518s00035536 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G12890.1 | 5.00E-07 | activator of spomin::LUC2 |
| NR | XP_004488804.1 | 1.51E-68 | PREDICTED: zinc finger protein CONSTANS-LIKE 4-like isoform X1 [Cicer arietinum] |
| trEMBL | tr|G7ITD4|G7ITD4_MEDTR | 8.00E-67 | CCT motif protein {ECO:0000313|EMBL:AES66391.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00518 | 107971 | 110562 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.098 |
| SRR1783600 | control | 0.114 |
| SRR1783602 | moderate drought stress | 2.331 |
| SRR1811619 | moderate drought stress | 2.384 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.830 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.114 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.463 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.411 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.627 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.559 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.118 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.090 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.365 |
| SRR2868004 | Drought Stress (root) | 0.574 |
| SRR2967015 | Control (root) | 0.623 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.106 |
| SRR9715740 | Leaf | 0.238 |
| SRR9715741 | Leaf | 0.371 |
| SRR9715739 | Root | 0.068 |
| SRR9715742 | Root | 4.864 |
| SRR9715743 | Root | 3.875 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.204 |
| SRR8749028 | MeJA induced 9h | 3.839 |
| SRR8749029 | MeJA induced 9h | 3.007 |
| SRR8749030 | Uninduced | 6.280 |
| SRR8749031 | Uninduced | 0.917 |
| SRR8749032 | Uninduced | 0.902 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.416 |
| SRR8400027 | Control - Root | 1.391 |