Gene detail information of Glyur000518s00035532 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G60900.1 | 9.00E-88 | receptor-like protein kinase 1 |
| NR | AES66383.2 | 6.93E-163 | malectin/receptor-like kinase family protein [Medicago truncatula] |
| COG | YP_006807242.1 | 8.00E-18 | serine/threonine protein kinase [Nocardia brasiliensis ATCC 700358] |
| Swissprot | tr|Q39202|RLK1_ARATH | 8.00E-105 | G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 (Precursor) |
| trEMBL | tr|G7ITC6|G7ITC6_MEDTR | 3.00E-163 | Malectin/receptor-like kinase family protein {ECO:0000313|EMBL:AES66383.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00518 | 66229 | 67047 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.9.2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000518s00035532.1 | PF00069.20 | Pkinase | 4 | 244 | 1.80E-40 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.413 |
| SRR1783600 | control | 0.577 |
| SRR1783602 | moderate drought stress | 0.503 |
| SRR1811619 | moderate drought stress | 0.440 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.397 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.395 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.477 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.133 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.275 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.147 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.411 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.938 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.233 |
| SRR2868004 | Drought Stress (root) | 0.514 |
| SRR2967015 | Control (root) | 0.224 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.071 |
| SRR9715740 | Leaf | 4.422 |
| SRR9715741 | Leaf | 11.364 |
| SRR9715739 | Root | 0.351 |
| SRR9715742 | Root | 1.588 |
| SRR9715743 | Root | 1.531 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.953 |
| SRR8749028 | MeJA induced 9h | 2.656 |
| SRR8749029 | MeJA induced 9h | 2.912 |
| SRR8749030 | Uninduced | 17.073 |
| SRR8749031 | Uninduced | 2.961 |
| SRR8749032 | Uninduced | 3.464 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.177 |
| SRR8400027 | Control - Root | 2.498 |