Gene detail

Gene detail information of Glyur000517s00018402

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17680.1	5.00E-41	disease resistance protein (TIR-NBS-LRR class), putative
NR	KEH41547.1	0	disease resistance protein (TIR-NBS-LRR class) [Medicago truncatula]
Swissprot	tr\|O82500\|Y4117_ARATH	8.00E-34	Putative disease resistance protein At4g11170
trEMBL	tr\|A0A072VIA7\|A0A072VIA7_MEDTR	0	Disease resistance protein (TIR-NBS-LRR class) {ECO:0000313\|EMBL:KEH41547.1}

Sequence

Transcript Sequence

>Glyur000517s00018402.1
ATGAGCCCACAGGTTCCAAAGGGGCTTGTCGGAATTAGTCGACACATTGCGCATGTGGAATCATTGTTATGCACGGCGTCAGATGATGTCCGTATTATTGGAATTTGGGGTATGGGTGGTATAGGTAAGACAACCATTGCAAATGCTCTCTGTGCAAAACTCTCTTCTCAATATGAGGGATGCTACTTTGTTGCCACTGTGAGGGAAGAATGGAAAAATCACAGAGAAAATGAGTTGCGGAATAAAGGTACCGACAGTATTGAAAGCATAGCATTGGACATGTCTCAAATCAAACAGGTGACATTAAGCCCTCAAACTTTTCACAGAATGGACAAGCTGAGGCTTCTGAATTTTTATATGCCCTCATGTGATAAGAGAAGAAGCAATGTGCATATTTCCAGAAGTCTTGAGTGTATGCCTTATGAATTAAGTTATCTCAGATGGGACTGTTTTCCATCGAAATCCTTGCCACCATCATTTTGNGCAGAGAAGCTTGTTGAACTTGATCTAAAACATAGCCTTATTGAAAAGCTTTGGGACGGAGTAAAGGATCTGGTAAATTTGAAGTCATTATATCTTTGTGGTTGCAAGCACCTGATTGAGCTCCCAGATTTCTCTATGGCCTCAAAACTTGGAGAAGTTCATCTTGATGATTGTACAAGTTTGTTGAATGTTCCTTCATCCATTTTGTCACTTAAAAGTCTGTTTGCATTAAATCTGAGAGGCTGTAAACAGCTTCGTTACATTCAAAGTGAGAAGCAATCCAGATCTCTTCAATGGCTTAATCTGAGAGGGTGCTCAAGACTTGTAAAGTATTCAGTTTTTTCAGAGAAATTGGAGTGCCTGAACTTAGATGGCACGGCACTTGAAGAACTTCCCTCATCAGTTATTGGTGTAGATTGTACCATTCAGCTTCTTGACTGTCCAAAACTTGAGAGATTACCTCCAGTGTCTGACACCTCATTGCTAAAGAAGAGATCATTGCTCAGACAGATTCAAGAAGAAGAACAAATGTTTATTCGTCATGGTGACTATTTGGGAAGATTTGATTTTTATAATTGCATAAAGTTGGACCAGATTGCATGCAAGACTATTATGGAGGAGGCACTAATCAGAATTCAGCTAGCAGCCTACCTGTCATCAACAATTGAAGAATTTTATGATCTTCATTGTCAAACCAATGATGTTTCTAAGAATTTTGACCCTGAAGATTTTGTTTATATTTCCCGTCCAGTATATATTATTCTACCGGGAAGTGAAGTGCCAAACTGGAAGAAAATTCATCGAATTGGTCTTATGGCAGGGTGTAGATACTATTTTAGAGGCATATATGTTGGAACTTGCATTATAAAGTCTTCTAGCAATGATGCTGAATCAGATCAGGTATGGCTTTGGTATGACAAAATTTCAGCAGCAGCAGCAGGCAAAGCAAGCGATTTGCCCGTGGAAGTCTCCTTTGAATTTTTTGTTAGACCTCATAGCTCAGCAGCAGCAGCAGCAGGCAAAACAAGCGATTTGCCCGTGGAAGTCTCCTTTGAATTTTTTGTTAGACCTCATAGCTCAGGACTTATTGTGAAACAGTGTGGAATTCGGCCACTGTGTGCTCCGTTTGACTTTGACATCATGAAAAGCTCAAATGAAGTAGGGTATCCTGATGGATGTGTCAAGAAATCCTTCCCATTATTTTGTTGTGCCAAGAATGTTACGACACTCGGAATGGAACACAACTTCTATAGCAATGAAGCTGTAGCATTGGTCTACTTTGGCCTTGTTGATCATGGTCGCCACCAACTATGTGATCTGAAGTGTTTAGCCCAACTGCTTCGGCATGACTATTGTTATTTTGGTGAACTCGTAGACAACATCAATGTCTTTTCCTCTCTAAGTGGATTGTCGCTAAATAGTTGCAATGTTGAAAGCTTGCCTGCTAGCATCGAGCATCTTTCAGGGCTTAAAGATCTTAAATTAAATGACCGCAAGAAGCTTAGGTCTCTCCCCAACCTTCCACCATCCCTTGAGTATTTACTTGAATGCTGTTTAGGATGCATGGATAACTACAATCCTTTCCCAAATTTTGTAGAACTGGTGCTGGTAAGATTTATCATGGACGCTTTGGGTCTTTTGCATGTTGATCTGCCTATTGAGGAAGCTTTTGATGTCTCCTACTGCAATATTTACGCATTTCAATCTGCCCAGAAATCACATGAAAAAGGTGTTGAGAACATGACAGTCGAGAAGATTTTTGGCCCTGGAAACCAATATGTCAGCTGCAAAATGATACTTCAAAACGGTGAAGCCATGGTTTGAATCGTCATGCCAGCTGGTCCATTTGAAGTTTTGGTCATTACAGACAAGCATGCAATTTTCCTTCACAGGTAGCTGCTAATTAACTTGGAGTTGATAGATCTACAACCTTTTGTTCTGCCTACACACTACCCAGTTGATTCCAACCTTTTTGGTTTTCTTGTACATAGCTAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00517	134126	141200	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000517s00018402.1	PF00931.17	NB-ARC	14	69	8.30E-08
Glyur000517s00018402.1	PF07725.7	LRR_3	164	183	1.40E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.740
SRR1783600	control	0.679
SRR1783602	moderate drought stress	0.503
SRR1811619	moderate drought stress	0.445

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.256
DRR006520	Root Summer glycyrrhizin high producing strain	1.118
DRR006521	Root Winter glycyrrhizin high producing strain	0.149
DRR006522	Root Winter glycyrrhizin high producing strain	0.133
DRR006523	Root Summer glycyrrhizin low producing strain	0.953
DRR006524	Root Summer glycyrrhizin low producing strain	1.074
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.315
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.198

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.177
SRR2868004	Drought Stress (root)	1.242
SRR2967015	Control (root)	1.648

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.097
SRR9715740	Leaf	4.132
SRR9715741	Leaf	3.090
SRR9715739	Root	0.759
SRR9715742	Root	2.425
SRR9715743	Root	2.337

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.775
SRR8749028	MeJA induced 9h	3.898
SRR8749029	MeJA induced 9h	1.198
SRR8749030	Uninduced	3.249
SRR8749031	Uninduced	2.110
SRR8749032	Uninduced	1.136

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.137
SRR8400027	Control - Root	1.959