Gene detail

Gene detail information of Glyur000517s00018392

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G28110.2	1.00E-91	serine carboxypeptidase-like 45
NR	KEH33274.1	2.16E-160	serine carboxypeptidase-like protein [Medicago truncatula]
COG	YP_002430787.1	2.00E-13	peptidase S10 serine carboxypeptidase [Desulfatibacillum alkenivorans AK-01]
Swissprot	tr\|Q93Y09\|SCP45_ARATH	7.00E-112	Serine carboxypeptidase-like 45 (Precursor)
trEMBL	tr\|A0A072UTV7\|A0A072UTV7_MEDTR	8.00E-161	Carboxypeptidase {ECO:0000256\|RuleBase:RU361156}

Sequence

Transcript Sequence

>Glyur000517s00018392.1
CTCAATTTGGCATTGGAGTAAGCACCAAAACTTGTTTGGAGAGAGGCATGATGGACCCAATTTTCACATTCACATGTACCAAATACATATAATATAATAATCACATAGGCCTTTATTATATTCCTTCCTTTTCCATTCAACCTTCATATCCTCTGGGTTAGTACGGAGGAAGAGAAGCCACACAGAACCAAAAATTAACTTCTCAGATCTTACCATGCTATCTCAGACTCAGTCATGTACTATGATTGCAACAACAACAATAACAATAGTTGTTGTTGCAGCACAGATAATTGCGGGAGCCAATTCGCTATCAGAAGAAGCTGATAATAAGATAAGCACTTTGNCTGGGCAGCCAACAGTGGAATTCAAGCAATATGGCNGTTANATTACAGTTGATGAGGTGCAGCAGAGAGCTTTGGTTTACTACTTTGTTGAAGCAAAAGTAGAACCAGCTTCCAAGNCAGTAGTGCTTTGGTTAAATGGAGGGCCTGGTTGTTCTTCTGTTGGAGCTGGAGCTTTTGTTAAGCATGGCCCTTTTAAGCCGACTGAAAATGGTCTTGTGAAAAATGATTACAGTTGGAACAAAGTAAGGGATAATCTTGTTTTCTTACAGCATTGGTTCACTAAATTCCCAGAGTACAAAAACAATGACTTCTTTATCACAGGAGAGAGCTATGCAAGTCACTATGTACCCCAGCTTGCACAATNCATTGTTCAAACCAAGACCAAGTTGAANCTCAAGGGGATTGCAATAGGGAATCCTCTTCTGGAATTCAACACGGATTTTAACTCTAGAGCTGAGTTTTTCTGGTCTCACGGACTGATATCGGACTCGACCTACGAAATCTTCACAAAAGTATGCAACTTTTCCCAAATTAGAAGACAATATCAAACTGGGACACTTACTGCCATTTGTGCAGGAGTAAATAGACTAGTGTCAACAGAGGTTAGTAAATATATTGATTCATATGATGTCACTCTTGATCAAGAGGGAGAGAAGATAGATGTTTGTGTGGAAGATGAAACAANTACATACTTGAATAGGAAAGAAGTGCAGGAAGCTCTCCATGCTAAGCTTGTGGGGATCACCAGATGGTCAACTTGCAGTGGATGAGCAGTTAGAGAAGATTATGAAGACAAGCCTGACAAAGGATTTGCAGGGGCTTCCGAAAGGGATAGGCCAGTGGAGTTTGGGAGTGAAGAAGCTGATCCATTTGGTCTGGATCAGTTCTTGATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00517	72321	74957	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004185 serine-type carboxypeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000517s00018392.1	PF00450.17	Peptidase_S10	126	298	7.90E-41
Glyur000517s00018392.2	PF00450.17	Peptidase_S10	48	147	1.80E-37
Glyur000517s00018392.3	PF00450.17	Peptidase_S10	3	165	1.50E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.019
SRR1783600	control	2.018
SRR1783602	moderate drought stress	6.881
SRR1811619	moderate drought stress	6.830

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.962
DRR006520	Root Summer glycyrrhizin high producing strain	5.339
DRR006521	Root Winter glycyrrhizin high producing strain	6.341
DRR006522	Root Winter glycyrrhizin high producing strain	4.995
DRR006523	Root Summer glycyrrhizin low producing strain	2.251
DRR006524	Root Summer glycyrrhizin low producing strain	2.893
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.598
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.623

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.367
SRR2868004	Drought Stress (root)	5.341
SRR2967015	Control (root)	6.775

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.062
SRR9715740	Leaf	11.508
SRR9715741	Leaf	13.269
SRR9715739	Root	0.580
SRR9715742	Root	2.136
SRR9715743	Root	1.643

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.655
SRR8749028	MeJA induced 9h	1.623
SRR8749029	MeJA induced 9h	1.007
SRR8749030	Uninduced	2.325
SRR8749031	Uninduced	0.620
SRR8749032	Uninduced	0.764

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.699
SRR8400027	Control - Root	11.267