Gene detail

Gene detail information of Glyur000517s00018383

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G57330.1	0	autoinhibited Ca2+-ATPase 11
NR	XP_004498043.1	0	PREDICTED: calcium-transporting ATPase 4, plasma membrane-type-like [Cicer arietinum]
COG	YP_005594402.1	1.00E-127	cation transport ATPase [Brachyspira intermedia PWS/A]
Swissprot	tr\|Q9M2L4\|ACA11_ARATH	0	Putative calcium-transporting ATPase 11, plasma membrane-type
trEMBL	tr\|Q93YX7\|Q93YX7_MEDTR	0	Calcium-transporting ATPase {ECO:0000256\|RuleBase:RU361146}

Sequence

Transcript Sequence

>Glyur000517s00018383.1
ATGGCCGAAAGGACAATAAAACCCTTGACAGATATTCGGATGTTGTTTGACAACCTGGCTGAAATTTGTGGAAAGATTCGGGCTCTTATCTACGCTCAACAAGCAGCTCTGCATTTTAAGGATGCTATTGGTACAGCTGAGTATAAGGTATCAGAAAAGACTAGAAAAGCTGGCTTTGGTGTTGAACCAGATGATATTGCATCAATTGTTCGAGCCCATGAATACAAGAACTATAAAAAAATTGGTAAAGTTGAAGGGATTACGAATAAACTCGCAGTCTCAGTTGACGAAGGTGTCAGTCAAGACAGTATCCATAGCAGACAAGAGACTTATGGACTCAACCGTTATCCTGAGAAACCTTCTAAAAGCTTCCTGATGTTTGTTTGGGATGCACTGCATGACTTAACACTGATCATTCTCATAATTTGTGCCGTAGTTTCTATAGCTATAGGGCTTCCCACTGAAGGGTTTCCAAAGGGTGTCTATGATGGTGTTGGAATCATACTTAGTATATTCTTGGTAGTCATTGTTACTGCTATTAGTGACTACCAGCAATCCCTGCAGTTCAGAGATTTGGACAAAGAGAAGAAAAAGATCTTTGTTCAGAAGGTCTCAATTTATGACTTGGTAGTAGGAGATATTGTTCATTTGTCAACTGGTGATCAAGTTCCAGCTGATGGAATTTATATATCAGGGTATTCATTGCTAATTGATGAATCAAGTTTGTCAGGAACCAAAGTGCAAGATGGTCAGGGGAAGATGATAGTTACAACTGTTGGCATGAGGACTGAATGGGGGAGGTTGATGGAAACCTTGAATGAGGGAGGAGAGGATGAGACTCCACTGCAGGTGAAATTGAATGGAGTTGCTACAATTATTGGTAAAATTGGTTTGACTTTTGCTGTGTTGACATTTGTTGTGTTGACTGCAAGTAGTTGGTCTTCAAATGATGCACTAAAGTTGCTAGACTACTTTGCTATTGCTGTAACAATAATAGTTGTTGCAATTCCTGAAGGATTACCATTAGCTGTGACACTCAGTCTTGCTTTTGCAATGAAAAAATTAATGAAAGACAGGGCACTTGTGAGACATCTTTCTGCGTGTGAGACTATGGGATCAGCTACCTGCATTTGCACAGATAAGACGGGGACATTGACAACCAACCATATGGTGGTTACTAAAATTTGGACATGCGAAAAGACCATGGAGATGAAAGGTAATGAGAGTGCAGACAAACTAAAAAAAGAGATATCTGAAAACGCTCTAAGCATCCTTTTGCAGGCTATATTTCAAAATACTTCCTCAGAAGTAGTTAAAGACAAAGACGGAAAGCAGACAATATTGGGAACACCAACAGAAGCAGCATTATTGGAATTTGGCTTGCTTTCAGGTGGTGATTTTGATGGCCAGCGTAGAGCCTGTAAGATACTTAAGGATGGAGCCTTTCAACTCAACCCGGAAGAAGATGTCTGTGCTTGTGGAGCTTTCTGTAAAGGTGCATCAGAAATAGTATTAAAAATGTGTGACAAAATCATTGATTGTAATGGAACAGCTGTTGATCTTCCTGAAGAGCAGGCTAAGATTGTCAATGATGTTATAAATGGCTTTGCCTGTGATGCTTTGAGAACTCTTTGTTTGGCTGTCAAAGATATAGATGAAACACAAGGGGAAGCTACTATCCCTGATAGTGGCTATACTCTGATAGCCATTGTGGGAATCAAGGATCCTGTTCGCCCCGGAGTTAGGGAGGCTGTTCAAACTTGTTTAGCAGCTGGAATAACTGTCCGCATGGTCACTGGTGATAACATCAATACAGCTAGGGCCATAGCTAAAGAATGTGGTATACTTACCGAGAATGGTGTAGCCATAGAGGGACCGGCATTCCGTGACTTGTCTCCAGAGCAAATGAAGGATATCATACCAAGAATTCAGGTGATGGCAAGATCCTTACCTCTTGACAAGCATACCTTGGTAACCCGTTTGAGGAACATGTTTGGTGAGGTTGTAGCTGTTACTGGTGATGGAACCAATGATGCTCCTGCACTGCATGAGTCAGACATTGGGCTTGCCATGGGCATAGCTGGAACCGAGGTTGCCAAAGAAAATGCTGATGTCATTATAATGGATGATAACTTTGCTACTATTGTCAATGTGGCCAGATGGGGACGGGCCATATACATAAACATTCAAAAATTTGTGCAGTTTCAGTTGACAGTCAATGTTTTTTGTTTTCCATTGGGAAGTGTTGTTGAATCTTTTTCACGAACTGAGACTAAATTTTCTTCTTTATTTTCAGGAGTTGCTCCACTCACAGCTGTTCAGTTGCTTTGGGTCAACTTGATCATGGACACTTTGGGTGCATTGGCCTTGGCTACTGAACCTCCTAATGAGGGACTTATGGAAAGGCCCCCAGTTGGAAGGAGAGCAAGTTTCATTACCAAACCAATGTGGAGGAATATCTTTGGTCAAACAATTAGCATGCCTATAGCTGTTATCCTCAAATGCATCCCAGTTGGAAGGGATGCTACAAAGCACCATGATGGTTATGAGGCACTGCCTTCTGGTCCCGAGCTGGCATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00517	18376	23527	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0070588 calcium ion transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0000166 nucleotide binding

GO:0005388 calcium-transporting ATPase activity

GO:0005524 ATP binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000517s00018383.1	PF00690.21	Cation_ATPase_N	82	147	2.50E-15
Glyur000517s00018383.1	PF00122.15	E1-E2_ATPase	166	370	4.80E-44
Glyur000517s00018383.1	PF00702.21	Hydrolase	375	685	9.10E-25
Glyur000517s00018383.1	PF00689.16	Cation_ATPase_C	768	832	6.30E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.801
SRR1783600	control	14.278
SRR1783602	moderate drought stress	15.532
SRR1811619	moderate drought stress	16.356

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.929
DRR006520	Root Summer glycyrrhizin high producing strain	11.949
DRR006521	Root Winter glycyrrhizin high producing strain	15.869
DRR006522	Root Winter glycyrrhizin high producing strain	16.806
DRR006523	Root Summer glycyrrhizin low producing strain	10.955
DRR006524	Root Summer glycyrrhizin low producing strain	10.787
DRR006525	Leaf Summer glycyrrhizin high producing strain	36.557
DRR006526	Leaf Summer glycyrrhizin high producing strain	36.047

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	37.775
SRR2868004	Drought Stress (root)	47.155
SRR2967015	Control (root)	40.665

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	46.110
SRR9715740	Leaf	45.779
SRR9715741	Leaf	61.100
SRR9715739	Root	9.760
SRR9715742	Root	33.533
SRR9715743	Root	29.701

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.717
SRR8749028	MeJA induced 9h	30.052
SRR8749029	MeJA induced 9h	12.325
SRR8749030	Uninduced	11.490
SRR8749031	Uninduced	4.741
SRR8749032	Uninduced	4.160

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.840
SRR8400027	Control - Root	26.128