Gene detail

Gene detail information of Glyur000516s00022264.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G64760.2	O-Glycosyl hydrolases family 17 protein
NR	XP_004493147.1	PREDICTED: glucan endo-1,3-beta-glucosidase 8-like [Cicer arietinum]
Swissprot	tr\|Q6NKW9\|E138_ARATH	Glucan endo-1,3-beta-glucosidase 8 (Precursor)
trEMBL	tr\|A2Q5Q4\|A2Q5Q4_MEDTR	O-glycosyl hydrolase family 17 protein {ECO:0000313\|EMBL:AES80828.1}

Sequence

Transcript Sequence

>Glyur000516s00022264.1
ATGGAGAAAAATTGGATTTTGAGGATGGTGATGGTGATGGGGATGATGGGTGGTTGGTGTGTGGAAGGGCTTGGTGTGAATTGGGGAACACAGGCAACACACAAGTTGCCACCAGAAACGGTGGTTCAGATGATGAAGGATAATGGGATTCAGAAGGTGAAGCTTTTTGATGCNGATGAGACTACCATGAGTGCTCTTGCTGGGTCNGGGATTGAAGTCATGGTTGCTATCCCTAATAATCAGCTTGCTGAGATGAATGACTATGGCAGGGCCAAACAATATGTAGCAGTTGGGAATGAGCCATTTTTGAAATCCTACAACAATTCATTCTTGAACATCACCCTACCAGCACTACAGAACATTCAAAATGCCCTTAACGAAGCCGGTCTTGGAAACACCATAAAGGCGACAGTGCCATTAAATGCNGACGTGTATCAATCTCCAGAGAGTAATCCTGTTCCATCTGCAGGAATATTTAGGCCCGACATCAATGGTCTAATGACTCAGATGGTGCAATTTCTCAACAAGAACAGCGCGCCATTCACTGTGAACATCTACCCCTTCTTGAGTCTTTACGGGAACGATGATTTCCCTTTTAACTANGCCTTCTTCGACGGGGTGGACAATCCCATAAACGACAATGGGATCCAATACACCAATGTCTTTGANGCGAATTTCGATACCCTGGTTTCCGCTCTCAAATCGGTGGGTTTTGGAGACATGCCNATTTTGGTAGGAGAAGTAGGGTGGCCTACGGAAGGGGACAAGAACGCCAACGCGGGTAATGCCTTGAGGTTCTACAATGGACTTCTGACAAGGCTCGCGGCGAATAAAGGAACCCCTCGCCGCCCCGGATTCATTGAGGTTTATCTCTTTGGACTTATCGATGAGGATGCCAAGAGCATTGCGCCGGGGAACTTTGAGAGACACTGGGGAATATTCAGATATGATGGGCAACCCAAGTTTCCAATGGACCTTTCTGGCCAAGGTCAAAACAAACTCCTCATAGGTGCACAGGGTGTGAAGTATCTTGCCCCNAAGTGGTGCATGTTTAACCCTGATGCCAAGGATCTCAGCAAGCTAGCGGATAACATCAATTTCGCTTGTACCTATGCGGATTGCACCGCGCTCGGGTATGGATCTTCTTGCAACAACCTCGACGCTAATGGGAATGCCTCTTATGCATTCAACATGTACTACCAGGTGCAAAACCAGGACCGCATGGCTTGCGGTTTCCAAGGTTTAGCCAAGCTCACCACAGACAACATCTCAACACCAACTTGCAATTTCATCATTCAGATTGTCCCTTCTTCATCCTCCTCTTTGATGCCCTCATTTGCAGTTTTATTATTTATTGCTTTTTCCATGATTCTCTTCTCTTAGAATTTTGTTGTATATACATTAGAGATGCTATTTTTTACTTTTATTTATGGTTTCATCATTTCTTGAGATAATCCGGATGATATTTAGTTTACTGATTCATTTAATAAAGAAAATTATAGATTGAGGGTAGCTTATATNGTAAACTTATATGCCTTGTGGGCTTTTGTTCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00516	130787	134164	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH17,CBM43

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000516s00022264.1	PF00332.13	Glyco_hydro_17	24	325	4.30E-61
Glyur000516s00022264.1	PF07983.8	X8	347	416	6.60E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	29.428
SRR1783600	control	29.160
SRR1783602	moderate drought stress	10.802
SRR1811619	moderate drought stress	10.739

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	47.509
DRR006520	Root Summer glycyrrhizin high producing strain	46.723
DRR006521	Root Winter glycyrrhizin high producing strain	7.418
DRR006522	Root Winter glycyrrhizin high producing strain	7.051
DRR006523	Root Summer glycyrrhizin low producing strain	68.746
DRR006524	Root Summer glycyrrhizin low producing strain	69.238
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.103
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.265

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.985
SRR2868004	Drought Stress (root)	19.779
SRR2967015	Control (root)	25.019

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	33.841
SRR9715740	Leaf	18.915
SRR9715741	Leaf	25.087
SRR9715739	Root	32.110
SRR9715742	Root	29.765
SRR9715743	Root	29.558

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	192.778
SRR8749028	MeJA induced 9h	156.574
SRR8749029	MeJA induced 9h	297.350
SRR8749030	Uninduced	100.906
SRR8749031	Uninduced	170.123
SRR8749032	Uninduced	161.076

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.351
SRR8400027	Control - Root	25.122