Gene detail

Gene detail information of Glyur000516s00022263.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G24050.1	8.00E-29	GATA transcription factor 1
NR	XP_007161927.1	7.71E-125	hypothetical protein PHAVU_001G109500g [Phaseolus vulgaris]
Swissprot	tr\|O82632\|GATA9_ARATH	5.00E-38	GATA transcription factor 9
trEMBL	tr\|V7CYD3\|V7CYD3_PHAVU	3.00E-125	Uncharacterized protein {ECO:0000313\|EMBL:ESW33921.1}

Sequence

Transcript Sequence

>Glyur000516s00022263.1
GTTGTGTAACTTGGAGCACCAATTTTGGCTTTCCATTTTTATCTTTCTCCCTTCCATTCCATTTCCCCTCTCTTGGTGGGTTTCAAATTTTTGTGTATACTATACTCTTTAAAGACTTCAGATTTTTAACCTTATGAACATGGATGTGTGCCAAAATGAGAAGGTCCTTGCCCCTTCTTGCTCAAACCTCTCAACCACCCTTGATGACCTCTTCTCTGCTCAGAACACGGAAGTGGATGTTGAGATGGAGTGGCTATCAGTGTTTGTTGAGGATTGTTTCTCAAGCCCACCAAGCTGTGTGTTGGTACCTTCTGGTGTTGTTCAGAACACTGGGACTATAACATCAAAACCTTCAGGAGGCACAATACTGAAGAGACCAACAAGGGAAAATGAGTCTCCTTTGCAAAAGTTTTCAGTTCCTGGGAAGGCAAGGAGCAAAAGGAAGAGACTTTCAGCCCCAAGAACAACAACCAATAAGGACCCTTTAAGCATTTGGTCACACCATTTGAACCCAAAAAATGAGGCCTTTAGTTCTGACCCTCCTCTCCTCAAACAAGCCTATTGGTTAGCTGATAGTGAACTCATTAATGTCCCTTATAAACACAAGGATATTGATGTTGATCATGAGAAAGAGGAGAAAGAGGTTGTGATGAGTGAGGGTGATGTTGTTGAAGAGGGTAGCAATAATAATAATGGTGAAAATGTTATTCCAATGCCAAGGAGGTGCACACATTGCTTGGCACAGAGGACCCCACAATGGAGAGCAGGACCATTGGGTCCAAAGACACTATGCAATGCATGTGGGGTGAGGTACAAGTCTGGGAGGTTGTTACCAGAGTATAGACCAGCCAAGAGTCCAACTTTTGTGAGCTACTTGCATTCCAATTCTCACAAGAAAGTCATGGAGATGAGGATGGCTGTTCCATCTTCTTCCATTCCCTAGCCAGCACTAGTAGTGGTTAGTGGTTAGTTATTACTTATTATACTTGTTTTTCATTGTAAATCAAAGTTTTCAAAAATTTAGGAAGAAAACTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00516	114754	116078	-

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-GATA

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0008270 zinc ion binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000516s00022263.1	PF00320.22	GATA	198	232	7.80E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.144
SRR1783600	control	8.008
SRR1783602	moderate drought stress	13.182
SRR1811619	moderate drought stress	12.769

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.366
DRR006520	Root Summer glycyrrhizin high producing strain	15.091
DRR006521	Root Winter glycyrrhizin high producing strain	0.932
DRR006522	Root Winter glycyrrhizin high producing strain	0.949
DRR006523	Root Summer glycyrrhizin low producing strain	7.975
DRR006524	Root Summer glycyrrhizin low producing strain	7.726
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.663
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.671

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.284
SRR2868004	Drought Stress (root)	12.905
SRR2967015	Control (root)	16.321

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.918
SRR9715740	Leaf	13.225
SRR9715741	Leaf	8.552
SRR9715739	Root	16.683
SRR9715742	Root	13.074
SRR9715743	Root	13.723

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.562
SRR8749028	MeJA induced 9h	2.518
SRR8749029	MeJA induced 9h	1.466
SRR8749030	Uninduced	1.313
SRR8749031	Uninduced	0.200
SRR8749032	Uninduced	1.139

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.398
SRR8400027	Control - Root	18.455