Gene detail information of Glyur000516s00022258 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G23840.1 | 3.00E-85 | HNH endonuclease |
| NR | AFK48930.1 | 5.16E-43 | unknown [Lotus japonicus] |
| COG | NP_926676.1 | 1.00E-38 | hypothetical protein glr3730 [Gloeobacter violaceus PCC 7421] |
| trEMBL | tr|I3T8T8|I3T8T8_LOTJA | 2.00E-43 | Uncharacterized protein {ECO:0000313|EMBL:AFK48930.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00516 | 93863 | 100881 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000516s00022258.2 | PF01844.18 | HNH | 211 | 253 | 7.90E-13 |
| Glyur000516s00022258.3 | PF01844.18 | HNH | 59 | 101 | 2.50E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.559 |
| SRR1783600 | control | 1.538 |
| SRR1783602 | moderate drought stress | 5.028 |
| SRR1811619 | moderate drought stress | 4.678 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.022 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.894 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.743 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.667 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.623 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.602 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 48.465 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 49.494 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.704 |
| SRR2868004 | Drought Stress (root) | 4.170 |
| SRR2967015 | Control (root) | 4.824 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 35.466 |
| SRR9715740 | Leaf | 51.308 |
| SRR9715741 | Leaf | 45.881 |
| SRR9715739 | Root | 0.097 |
| SRR9715742 | Root | 0.671 |
| SRR9715743 | Root | 0.709 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.266 |
| SRR8749028 | MeJA induced 9h | 8.380 |
| SRR8749029 | MeJA induced 9h | 8.678 |
| SRR8749030 | Uninduced | 14.221 |
| SRR8749031 | Uninduced | 7.360 |
| SRR8749032 | Uninduced | 12.910 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.875 |
| SRR8400027 | Control - Root | 3.953 |