Gene detail information of Glyur000516s00022257 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G02220.1 | 3.00E-134 | phytosulfokin receptor 1 |
| NR | XP_003553298.1 | 0 | PREDICTED: phytosulfokine receptor 1-like [Glycine max] |
| COG | YP_004775215.1 | 8.00E-47 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| Swissprot | tr|Q8LPB4|PSKR1_DAUCA | 0 | Phytosulfokine receptor 1 (Precursor) |
| trEMBL | tr|K7MXL5|K7MXL5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G27323.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00516 | 89946 | 91964 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000516s00022257.1 | PF08263.7 | LRRNT_2 | 42 | 73 | 2.80E-05 |
| Glyur000516s00022257.1 | PF13855.1 | LRR_8 | 81 | 138 | 1.00E-08 |
| Glyur000516s00022257.1 | PF13855.1 | LRR_8 | 155 | 214 | 5.70E-08 |
| Glyur000516s00022257.1 | PF00560.28 | LRR_1 | 227 | 249 | 0.54 |
| Glyur000516s00022257.1 | PF13516.1 | LRR_6 | 297 | 320 | 0.47 |
| Glyur000516s00022257.1 | PF00560.28 | LRR_1 | 446 | 466 | 0.047 |
| Glyur000516s00022257.1 | PF13855.1 | LRR_8 | 509 | 564 | 3.90E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.436 |
| SRR1783600 | control | 0.436 |
| SRR1783602 | moderate drought stress | 0.484 |
| SRR1811619 | moderate drought stress | 0.504 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.846 |
| SRR2868004 | Drought Stress (root) | 12.065 |
| SRR2967015 | Control (root) | 10.341 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.031 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.275 |
| SRR9715742 | Root | 0.288 |
| SRR9715743 | Root | 0.317 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.747 |
| SRR8749028 | MeJA induced 9h | 3.807 |
| SRR8749029 | MeJA induced 9h | 0.791 |
| SRR8749030 | Uninduced | 3.353 |
| SRR8749031 | Uninduced | 3.249 |
| SRR8749032 | Uninduced | 0.388 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.237 |
| SRR8400027 | Control - Root | 2.430 |