Gene detail

Gene detail information of Glyur000516s00022255

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G54385.2	2.00E-137	ARM repeat superfamily protein
NR	XP_007161932.1	0	hypothetical protein PHAVU_001G110000g [Phaseolus vulgaris]
trEMBL	tr\|V7CYD9\|V7CYD9_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW33926.1}

Sequence

Transcript Sequence

>Glyur000516s00022255.1
ATGGGAAGAAGAAATCTCAGCCAGGAAGAGCTGGTAAATCTTGACATGAAAGAATTGCAGTCATACGTGAAAGACTTGGATTTAAAGGCCATTCCNGTCTTTCTTGCAAAAGCTTCTGAGACAAAAGAAAACAGTTCATTCTCTTGGGAATTCACAATTTCCCTATATGAAGTTGTTGCCCGGGTTCATGGTGTGAAAATTGTTCCCTTGATAGACAGCATCATGGGGTCCATAGTTAAGACCTTAGGTTCAAGTGCTGCAGGGTCTTTCCCTCTTCAGCAGGCTTGTTCAAAGGTTGTCCCAGCAATTGCAAGATATGGAATTGACCCCACAAGTACAACCCCAGAAGAGGATAAGAGGAAGATAATCCATTCCCTTTGCAAACCCCTTTCTGATTCCCTCTCAAGTTCACAGGAGAGCCTAAATTCTGGTGCAGCACTATGCTTGAAGGCCCTGGTGGATGCAGATAATTGGAGGTTTGCCTCTGATGAAATGGTGAACATGGTTTGCCAGAATGTTGCTGTGGCATTAGGGGGAAAGTCCAGTTCCAGCCAAACCAATTCACACATGGGTTTGGTAATGGCGCTGGCGAGGCNCAACCCTTTGGTTGTTGAAGCCTATGCAAGGTTGCTCATACAATCTGGACTGAGAGTACTAAATGGTGGCCTTGTGGAGGGAAATTCTCAGAAGAGGCTCTCAGCCATTCAGATGGTGAACTTCTTGATGAAATGTTTGGATCCAAGGAGCATATTCTCGGAGCTCGAATTGGTAATTGAGGTGATGGAGAAGTGCCAGTGTGATAAAATGGCATATGTCAAAGGTGCAGCATTTGAAGCTTTGCAAACTGCAAAGAGAATTGCAAGTGAGAAAAAGCCAAGATATGTAAGAAGCTACCCTGCTTCTTTGACAGGGTCAAATTTCAGTAGGGGAGAGAATGAGAATGAGAATGTTTCTGGTGATGGAGACCATTCTCCTAGTGCATCTGTTTCACCAGAATCACAGATATTGGACTTTTTGCCTGGATATGATTCTGTTGTTGAGTCTCCTTTCTCAACAAACATGGGCTATGAGCGAAGGAGTGTCAATAGGAAGCTTTGGAGGAATGGAAATGGAGGAGTTGATGTGTCTCTTAAGGATGGTTTGTTGTCGGGGGTAGTGCAAGAAAGTGCTTTATTAGANAACTCTGTGAGCCATGAGTTTTCTAATGGAAAGGGAGATTTTGTGGAGGAGTTTGATGGTTTGATGGATAGAAATCCTAGGCATGGAGTATCCAAAAGTACCACCACAAGTCCCCAAAGGTCATACATACAGGCTATTACTGTAGACAGCACTGAAATCTTTAAGACCCCAAGGAAGCTCATTCACTCTCTTCAGTATCAAAATGACATGACTTTGGATTGCTCCAAGAAACAGAATGGAAAGTATAGGAGTCTATCCTCTGGCAACATTGAGTGGACCCCNACATCTAAATGTGACCAGCATAACTGCTTCTCAGATCATGTGAAGAAGTATGACTGTGTAGTGAATGGATGCTTATGTGCTGATGTGGAGTTCCAAGCTGGATCATCAGAGTCAGTCTCATCAGCTGGGGATGCTGATATACAGATGATGCCTTCTAAGGTGGTTCTTGAAAATAGAAAAGTTACTACACAAATGGATCTCATGCAAAAAGCACTTCAAAAGACTAAATTTAAATTGGTTTGTGGTCTTTCATTTGTTCTTCTTGCAATGGCTACTCCTTTACTCTGGATCAATAGTCAGGATGAAGGCCATTGTCTTGTCCCAACATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00516	63220	66673	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0000387 spliceosomal snRNP assembly

GO:0000398 mRNA splicing, via spliceosome

cellular_component
GO:0005681 spliceosomal complex

molecular_function
GO:0005488 binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.150
SRR1783600	control	4.121
SRR1783602	moderate drought stress	0.977
SRR1811619	moderate drought stress	0.986

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.061
DRR006520	Root Summer glycyrrhizin high producing strain	0.060
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.622
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.615

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.994
SRR2868004	Drought Stress (root)	0.669
SRR2967015	Control (root)	1.005

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.456
SRR9715740	Leaf	1.171
SRR9715741	Leaf	0.331
SRR9715739	Root	3.457
SRR9715742	Root	0.253
SRR9715743	Root	0.766

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.736
SRR8749028	MeJA induced 9h	0.442
SRR8749029	MeJA induced 9h	0.706
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.064

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.450
SRR8400027	Control - Root	8.418