Gene detail

Gene detail information of Glyur000516s00022250.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G03940.1	0	Protein kinase family protein
NR	XP_004493152.1	0	PREDICTED: uncharacterized protein LOC101504885 isoform X1 [Cicer arietinum]
COG	YP_005321927.1	2.00E-14	peptidase c14 caspase catalytic subunit p20 [Saprospira grandis str. Lewin]
Swissprot	tr\|P42158\|KC1D_ARATH	2.00E-55	Casein kinase I isoform delta-like
trEMBL	tr\|V7CYE5\|V7CYE5_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW33931.1}

Sequence

Transcript Sequence

>Glyur000516s00022250.1
GAGAGAGAGAGAGAGAGAGAGAGAGCAAAGCAAAGCAAATACAACACAATACACACACGTACACAACCAACAACAACAACAGCAATAAACTCACCATTACCGCATTCTCTCTTTCGAAAGAAGAGAAAAAAAAAAATATAGAGAGATAAACAATAACCAAGAGAGGGTAACCCATATCTTCTTCCACCACCTAATATACTCGAGAACCGTTCTTCTTCTTCTTTGTTCCCAACCCTAAATTCATTCATCGTGTGACGAACGATCGATGCTTTCTTCGCCGTAACTTGTTTGTTTCGCTTTTTTTTTTCACTCCAAACGAAGCCGAACCTTTTTTCCATTCCCTTCATCACCATTACGCATTCCTATCGTTTTCCTCACTGATTCTTCNACGATCCTCACTTCGATCGCTCTCTCTTTCCTTTTCTTCGTTAATCGCTCCCCGATCCTTCTATTTTCGAAGCTCCACGGATCGATCTAGGTGATTTTTTTTTCCATTTTTTGGGGCTACTAATGTGGGCTATGATTTGAATGGGGAGAGGATGCCAGAGTTGAGAAGTGGAGCTAGAAGGTCGAAGCGGCTTGGAGATCTTCAGCCTGGTCCACTACCTGTTGATCAAGGAGAGAATTGGGCNCAGCCTGCTCAGAACAGAACTAGGAGGAGAGTTGGTGGGAGAGGAAGAGGCGGGAATGCCACAGCTGTAGGTAAAGGGTCTTCACCAGCTGTACCCACAAGGCGAACTGCAGCTGGTAGAGGCCGNGGAGCAAGATTGATTGATCTGGATCCTGAACCTTGCGAGGTCCTTCCAGAACCTGTTGCATTAGGGGCTCCGGAACCCATTTACAATCCCATAGAGGTAGTGGCCAATAATAATATTGTGATGGAGGGTGGAAGTGCAGATAAGGTGGCAGCAGGAGCTGAAGAAGAAGCAACCACAACCCCTGTCCCTGAGAGGGTACAAGTCGGAAACTCTCCTGTATATAAGATAGAAAGGAAGTTGGGTAAGGGTGGTTTTGGCCAAGTGTATGTTGGCAGAAGATTAAGTGGTGGCTCTGAACGAACAGGTCCTGATGCTATCGAGGTTGCACTGAAGTTTGAGCATAGAAACAGTAAAGGTTGCAATTATGGGCCTCCTTATGAGTGGCAAGTTTACACTACTCTGAATGGTTGTTATGGCATTCCCTGGGTTCATTACAAGGGTCGACAAGGAGATTTCTACATTTTGGTGATGGACATGCTTGGACCCAGCCTTTGGGATGTATGGAATTCTCTCGGCCAATCGATGTCNCCAAGTATGGTTGCTTGCATTGCAGTGGAGGCAATAGCAATTCTCGAGAAGCTACATTTGAAAGGGTTTGTGCATGGAGATGTGAAGCCAGAGAACTTTTTGCTTGGTCAACCTGGATCGGCTGATGATAAGAAGTTATATCTTATTGATCTTGGTTTGGCCTCTAGATGGAAGGANGCATCATCTGGTCAACATGTTGAATATGATCAGAGACCTGATATATTCAGGGGAACAATAAGGTATGCTAGTGTGCATGCNCATTTGGGTAGGACTGGTAGTCGAAGGGATGATCTTGAGTCACTGGCATACACGTTAATATTTCTTATAAAAGGGAGATTGCCGTGGCAGGGTTATCAGGGTGACAATAAAAGTTTTCTTGTCTGTAAGAAAAAAATGGCTACTTCCCCGGAGTTGATGTGCTGCTTTTGTCCTGCTCCGTTTAAGCAGTTCCTAGAAGCTGTTACTAACATGAGATTTGATGAGGAGCCAAATTATTCCAAGCTTGTAGCACTTTTNGATAGCTTGATTGAACCGTGCACTCCATTGAGACCTATTAGAATTGATGGAGCTTTAAAGGTTGGTCAAAAGCGAGGAAGGACGCTTATAAATCTGGAAGAAGATGAACAGCCTAAGAAAAAAGTGCGATTGGGGAGTCCAGCTACTCAGTGGATATCNGTGTATAATGCACGCCGTCCCATGAAGCAAAGATATCATTATAATGTAGCAGACACTAGGCTCCGACAGCATGTAGACAAGGGTATTGAGGANGGGTTGTATATAAGCTGTGTGGCCTCTTCAGCAAATTTGTGGGCCCTAATCATGGATGCAGGAACGGGTTTCAATTCCCAGGTTTATGAGTTATCACCGGCCTTCCTGCACAAGGATTGGATTATGGAACAATGGGAGAAAAATTACTATATCAGTTCAATAGCTGGTGCAGTTAACGGGAGTTCCTTGGTTGTCATGTCCAAAGGAACTCCTTACACACAGCAGTCCTACAAAGTGAGTGAATCATTTCCTTTCAAATGGATAAACAAGAAGTGGAAAGAAGGATTCCATGTTACCTCCATGACTACTGCTGGCAATCGCTGGGGTGTTGTTATGTCCAGGAATGCTGGGTATTCTGATCAGGTTGTGGAGCTTGACTTTTTGTATCCAAGCGAAGGAATACATCGACGATGGGAGAATGGTTACCGGATTACTTCTATGGCAGCTACTAATGAACAGGCAGCCTTCATACTGAGCATACCAAAGCGCAAACTGCTTGATGAAACTCAAGAGACTCTGCGCACATCTGCTTTCCCTAGCACCCATGTAAAGGAAAAATGGTCCAAGAATCTCTATATTGCTTCAATATGTTACGGACGAACTGTTTGCTAGCTTCTGCAGTGAACACTTGCTATATTCTTGAAAAATGAGGCAAAATTAAAAAGATGAGAGGATTTCTCTTTTCCGTGATTATTAAGCTGGAATGGGTAGGTTTTGTTTTTCCCCCAGACCCAGTCACGAAAGAAAAATCCTTCCCATATAAAAATTTCGCTAGTATAATTGTATAAAAAAGAAAAGGGTAAAAAGGAGAAACAGAAGCGAGCAATGCTGTGAGAGCGTGTTCCCCAACCAACCCGAGCCAATGGGAGCAATGATTTCTTGAAGTGAATTAACATGTTTAAGGGGTGCTGGTTATTTGGCCACGTTTCAAGGTTGTGCTTTTAAACAATTTGCGATTTTGTATGTAATGATATAAATTCTTACCTACACGATCATAAACATAAAAACAACGAATTCTAAGATATAATCATTTCTAGATTTTGAAGACTAATTCTTCGCAGTCAATGACTGGTGGAGGAGGTCTTGTGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00516	27538	35474	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:3.1.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000516s00022250.1	PF00069.20	Pkinase	147	403	1.30E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	49.538
SRR1783600	control	50.143
SRR1783602	moderate drought stress	39.047
SRR1811619	moderate drought stress	38.436

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	61.020
DRR006520	Root Summer glycyrrhizin high producing strain	60.118
DRR006521	Root Winter glycyrrhizin high producing strain	49.875
DRR006522	Root Winter glycyrrhizin high producing strain	48.285
DRR006523	Root Summer glycyrrhizin low producing strain	58.955
DRR006524	Root Summer glycyrrhizin low producing strain	58.745
DRR006525	Leaf Summer glycyrrhizin high producing strain	39.480
DRR006526	Leaf Summer glycyrrhizin high producing strain	39.228

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	68.484
SRR2868004	Drought Stress (root)	72.165
SRR2967015	Control (root)	67.287

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	33.686
SRR9715740	Leaf	40.977
SRR9715741	Leaf	40.122
SRR9715739	Root	10.542
SRR9715742	Root	48.478
SRR9715743	Root	39.374

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	130.201
SRR8749028	MeJA induced 9h	101.732
SRR8749029	MeJA induced 9h	98.296
SRR8749030	Uninduced	68.427
SRR8749031	Uninduced	116.778
SRR8749032	Uninduced	68.914

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	63.126
SRR8400027	Control - Root	61.891