Gene detail information of Glyur000516s00022248 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G03920.1 | 1.00E-46 | H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein |
| NR | XP_004493161.1 | 6.97E-68 | PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1-like isoform X2 [Cicer arietinum] |
| Swissprot | tr|Q8VZT0|NLAL1_ARATH | 1.00E-60 | Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 |
| trEMBL | tr|V7CUT1|V7CUT1_PHAVU | 7.00E-67 | Uncharacterized protein {ECO:0000313|EMBL:ESW33932.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00516 | 21041 | 23375 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000516s00022248.1 | PF04410.9 | Gar1 | 39 | 190 | 2.80E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 25.658 |
| SRR1783600 | control | 25.601 |
| SRR1783602 | moderate drought stress | 28.552 |
| SRR1811619 | moderate drought stress | 29.575 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 54.681 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 53.696 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 24.662 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 24.467 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 84.615 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 81.691 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.887 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.163 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 113.251 |
| SRR2868004 | Drought Stress (root) | 69.468 |
| SRR2967015 | Control (root) | 80.753 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 23.258 |
| SRR9715740 | Leaf | 27.891 |
| SRR9715741 | Leaf | 22.335 |
| SRR9715739 | Root | 72.813 |
| SRR9715742 | Root | 60.883 |
| SRR9715743 | Root | 61.255 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 220.100 |
| SRR8749028 | MeJA induced 9h | 79.969 |
| SRR8749029 | MeJA induced 9h | 158.510 |
| SRR8749030 | Uninduced | 12.641 |
| SRR8749031 | Uninduced | 13.281 |
| SRR8749032 | Uninduced | 32.357 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 57.041 |
| SRR8400027 | Control - Root | 55.428 |