Gene detail information of Glyur000516s00022243 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G18140.1 | 4.00E-67 | Chaperone DnaJ-domain superfamily protein |
| NR | XP_004493155.1 | 0 | PREDICTED: dnaJ homolog subfamily B member 7-like [Cicer arietinum] |
| COG | YP_006844995.1 | 8.00E-19 | chaperone protein DnaJ [Amphibacillus xylanus NBRC 15112] |
| Swissprot | tr|Q9SDN0|DNJ20_ARATH | 8.00E-13 | Chaperone protein dnaJ 20, chloroplastic (Precursor) |
| trEMBL | tr|A0A072UCE8|A0A072UCE8_MEDTR | 1.00E-166 | Chaperone DnaJ domain protein {ECO:0000313|EMBL:KEH23525.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00516 | 455 | 4587 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000516s00022243.1 | PF00226.26 | DnaJ | 59 | 120 | 2.20E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.925 |
| SRR1783600 | control | 13.952 |
| SRR1783602 | moderate drought stress | 12.530 |
| SRR1811619 | moderate drought stress | 12.650 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.820 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.917 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.772 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.529 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.887 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.093 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 33.436 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 33.739 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.411 |
| SRR2868004 | Drought Stress (root) | 13.813 |
| SRR2967015 | Control (root) | 17.661 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 17.054 |
| SRR9715740 | Leaf | 16.569 |
| SRR9715741 | Leaf | 17.923 |
| SRR9715739 | Root | 8.298 |
| SRR9715742 | Root | 6.836 |
| SRR9715743 | Root | 7.381 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 53.221 |
| SRR8749028 | MeJA induced 9h | 34.781 |
| SRR8749029 | MeJA induced 9h | 47.150 |
| SRR8749030 | Uninduced | 70.897 |
| SRR8749031 | Uninduced | 69.043 |
| SRR8749032 | Uninduced | 28.356 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.241 |
| SRR8400027 | Control - Root | 18.915 |