Gene detail

Gene detail information of Glyur000515s00023224

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G04480.1	2.00E-94
NR	KEH36883.1	0	F-box plant-like protein, putative [Medicago truncatula]
Swissprot	tr\|O65451\|FB333_ARATH	2.00E-121	Probable F-box protein At4g22030
trEMBL	tr\|A0A072V6D3\|A0A072V6D3_MEDTR	0	F-box plant-like protein, putative {ECO:0000313\|EMBL:KEH36883.1}

Sequence

Transcript Sequence

>Glyur000515s00023224.1
ATGGCTTCCTTACAAATCTCATCTGTTATATCTTCTTCTTCTATGAGAACAGTCAACGCTGCCATCCATGTCCCAAAACTCCCACGAGTGCTGCCTCTCTCGGTTCCACAATTACCAAAAACAACAAGGCTGGTTGAGGAATTTAATGGATTCATAGACACAATCCAAGTCGAAAAGAATGTCTCANACGAGGGTTTACACAGACCCAAATCACCAAACAACAAAAAGTCAAANGCCAATATTACCCAACTCTATGCAATCTTGGAAGCNGTAGCCGACAGAGTTGAAATGCACAAAAACATTGGCGAGCAGCGCGACAANTGGAACACCCTTCTTTTGAACTCCACCAACATGATTACTCTCACTGCTACCCTCATGGCTGGTGTTGCTGCCACAAGCGGTGAAGGTGCATCGCTTTTGGCTCTGAAATTGTCTTCCGCTCTGTTGTTCTCTGCGGCCACTGGGATGTTGCTTGTGATGAACAAGATTCAGCCTTCTCAACTCACAGAGGAACAACGCAATGCTACTAGATTGTTCAGACAGCTTCAGACACAGATCCAAACCACAATTGCGCTTGGAAATCCAACAGAGGAAGATGTGAAAGGTGCAATGGAGAAGGTATTGGCGCTTGACAGAGCATACCCACTTCCCTTATTAGGAGCCATGCTTGAAAAANTCCCTGCAAAATTTGAGCCTGCCGTTTGGTGGCCTAAAACACAGTTCCAAAGGAAAAACAAACCACAAGAAGTTAAAGCACAGAGCGAGAGAATGAATGGATGGAGTGAGGAACTAGAAATGGAAATGAGGGAGGTTGTGGAGGTTGTAAAGAGAAAAGACAGTGAGGACTATGAAAGGCTTGGAAACATGGCGTTGAAGATCAATAAGACTCTTGCCATTGCAGGGCCTTTACTCACAGGCATTGCTGCTGCTGGATCTGCATTTGTGGGCCATGGTTCTTGGGCAGCTTTAGTGCCTCTCATGGCTGGTTCATTGGCTTCAGCAGTTAATGCCTTTGAGCATGGAGGGCAAGTTGGCATGGTTTTTGAAATGTACAGAACTTCTGCTGGCTTCTTCCACATGTTAGAAACCTCAATTGAGTCAACTTTAGGAGAGAGAGATTTAGAGCGAAGAGAAAATGGGGAGATGTTCGAAATGAAGATGGCATTGCAGTTGGGAAGAATTCTATTTTGTTGTTCTTCCTCGTCTTCAAAGAGGGTGGTAAATGCCGCAATCCATATCCCAAAACTCCCAAGAGTCGATTTTTCGGTTCCAAAGATACGCAGTACCACAAAGCAAGTTGANGAATTAAAACTCAAAGACACAACCCCATTACTTGAAAAGCATGTCAGCAGCACACAATTACACGATGAAGAACAGCACCTTACNAATTCTAAAGCCATTGTTCAACTCTATGCAATCTTGGAAGCCGTGGCTGACAGAATTGAAACGCACAAAAACATTGGTGAACAACGTGACAACTGGAACACCCTTCTCTTGAACTCCATCAACATGATCACGCTCACTGCGACAGCCATGGCTGGTGTTGCAGCCACGAGCGGCGAAGGTGCACCGCTTTTGGCTCTGAAACTATCCTCTACTCTGTTGTTCTCTGCGGCCACAGGGATGTTGCTTGTGATGAACAAGATCCAGCCTTCTCAACTCACAGAGGAGCAACGCAATGCAACAAGATTGTTCAGGCAGCTTCAAACACAAATTCAAACCACAATTGCGCTTGGAAATCCAACAGAGGAAGATGTGAAAGGTGCAATGGAGAAGGTTTTGGCACTTGACAGAGCATACCCACTTCCCCTTTTGGGAGCCATGCTTGACAAATTCCCTTCAAAGTTTGAGCCNGCCGTTTGGTGGCCTAAAACACAGTTCCAAAGGAATAANAAAGCCCAACAAGTTAAAGCACAGAGCGAGAGAATGAATGGATGGAGTGAGGAATTAGAAGTGGAAATGAGGGAGGTTGTGGAGGTGGTAAAGAGAAAAGACAGTGAGGACTATGACAGGCTTGGAAACNTGGCGTTGAAGATAAACAAGACTCTTGCCATTGCAGGGCCTTTNCTCACTGGCATTGCTGCTGCTGGATCTGCATTTGTGGGCCATGGTTCTTGGGCAGCATTGGTTCCTCTCATGGCTGGTTCTTTGGCTTCAGCGGTTAATGCTTTTGAGCATGGAGGGCAAGTTGGCATGGTTTTTGAGATGTACAGAACTTCTGCTGGCTTCTTCCACTTGTTAGAAACCTCAATTGAATCAACATTAGGAGAGGAAGATTTAGAGAGAAGAGAAAATGGGGAGATGTTCGAAATGAAGATGGCATTGCAGTTGGGAAGAAGTGTATCAAACCTGAGGGAACTTGCCTCAAAATCAGCTTCCTACCCGCTACTTATTAATTACCCTTTATCTTCCTCTTCCTCTTCTTCTCCATCTTTAAAGAGAATCAAATGCGGTATTAATAATACCCCCAAAAAACTACCGCGATTCTCCTTGTTCTCTGTTCCAAAAGCATCGAGGAGAAGCATTGTCGTTGAGGAAATGCAAAGATTCACAGACGACAAAGAAAAAGCCCCATTGCAAAAGAATATTGACACCAGCAAAATACTACACCATGATGATGANGANGACGACGACGACGANGATGTATATGAATATGATTCTACAAATAATTCTATGGCCGCAACTGTTAAACTCTATGCAGTGTTAGAGGCCGTAGCTGAAAGAATTGAAATGCATAACAACATGGGAGAGCAACGTGACAACTGGAACACCCTCCTTTTAAACTCCATTAACATGATAACGCTCACGGCCTCAACCATGGCTGGTGTAATTGGCTTTGGTGGGGGTGCTCCTGCACCTGCACCGTTTTTGGCTCTGAAGCTATCCTCTGCTCTGTTATTCTCTGCAGCCACTGGAATGTTGCTTGTGATGAATAAACTCCAACCCTCACAGCTTGCAGAGGAACAGAGGAACGCCACAAGACTGTTCAAGCAGCTTCAGACCCAAATCCAAACAAAAATCGCACTTGGCAATCCCATTGATGAACATGATGTGATGGATGCAATGGAAAAGGTTTTAGCACTTGACAAAGCTTACCCTCTCCCCTTGTTGGGAGGAGCAATGCTTGAAAAATTCCCAGCAAAGTTTGAAGCAGCTACTTGGTGGCCTTCTCAAAAGAAAAGTAGAGTACTGAACAAGGACAATAAGATTGAGAATGAGAACAATAATGGGTGGAATGAGGAGTTGGAAAAGGAAATGAGGGAGGTTATTGAAGTGGTGAAGAGAAAAGACATGGAGGACTATGAGAGGTTGGGGAACATTGCATTGAAGATGAACAAGGCTTTGGCTATTTCAGGGCCTTTGTTCACAGGAATTGCAGCTGTGGGGTCTGTCTTTTCAGGAGATCATGGTTCATNGGTTCCTGTCATTGCCGGGGCGTTGGCTACTGTGGTTAATGCTTTTGAGCATGGAGGGCAAGTTGGTATGGTGTTTGAAATGTACAGAAACTGNGGTGGGTTCTTCGAGCTGTTGGAAGAGACGGTTGAGACGACCATTGAAGAGAAAGACATGAGGAAGAGAGAAAATGGGGAGCTGTTTGAAATGAAGATGGCTTTGAAATTGGGAAGAAGCGTGTCGCAGCTGAGAGAGCTTGCTGCTAAATCTGCTTCCTATCGCATGGAAGGAATTTCATCTCTGCTTTCCTCTTCTTGTTCTTCTTCAAAAAGAATCAATTCCTCTATCCCAAAACTCCCTAGAGCTCTTTCCGTAACTCCTCCAAAACCAAGGCCAAGCAGAAAGCTTTTTGAGGAATTGAACGGCCGCTTCACACACACAATCCCAATAACAATCCAAGATGATCAATCATGTAATTCCCCCACCACATCATCAAAAACCACCACCAAACTTTACGCAATTCTAGAAGCCGTAGCAGACAGAATTGAAATGCATCACAACGTTGCGGAGCAACGAAACAACTGGAACACCCTTCTCTTAAACTCCATCAACATGATCACTCTCACCGCAACAGCCATGGCAGGTCTCGCAGCAGCAGCAACAAGCGGAGCCGCAGCGCCACTTTTCGCCCTGAAACTATCGTCCACGCTTTTGTTCTCTGCCTCCACGGGTATGCTAATTGTCATGAACAAAATCCAACCCTCACAACTCGCCGAGGAACAACGAAATGCCACAAGGTTGTTTAGACAGCTCAAGTCCCACATCGAAACCAGAATCGCTTTGGGCAATCCAACAGAGAAAGATGTCAAGGATGCAATGGACAACGTTTTGGNGATTGACAGAGCTTACCCACTTCCCTTAATAGGAACAATGCTTGAAAAATTCCCTGAAAAATTTGAGCCTGCGGTTTGGTGGCCTTCAACAAAATCAAAAACGAAATCTTTTAGGAGAATCAATAAGTCCCAACCAAACGGGTTGAAAAACAATGGATGGAGTNAGGGGTTAGAGAGTGATTTAAGGGATGTGTTGGAAGTGGTGAAGAGAAAAGACATGGAGGACTATGAGAGATTGGGGAACTTGGTGTTGAAGATAAACAAGACTCTGGCAATTGCAGGGCCTTTGTTAACTGGAGTTGCTGCTGTGGGGTCCACTTTTGTGAGCCAGGGTTCATGGGTAGCCATGGTTCCTGTTATGGCTGGTGCATTGGCTACTGCTGTGAATTCCTTTGAGCATGGTGGGCAAGTTGGGATGGTGTCTGAAATGTACAGAGCCTGTGGTGGCTTCTTCCAATTGCTGGAGAGTTCGATCCAAGAGACAATAATGGAGGAAGATGTGGAACAGAGAGAGAATGGGGAGTTGTTTGAAATGAAGTTGGCTTTGAAATTGGGAAGAAGCCCGTCACAGCTCAGAGATCTTGCAAGGAAATCAGCTTATTCTCGTGTAGAGGGAACTAGCATTGATGAATTCGCTAGCAAGCTTTTCTGA

Protein Sequence

>Glyur000515s00023224.1
MASLQISSVISSSSMRTVNAAIHVPKLPRVLPLSVPQLPKTTRLVEEFNGFIDTIQVEKNVSXEGLHRPKSPNNKKSXANITQLYAILEAVADRVEMHKNIGEQRDXWNTLLLNSTNMITLTATLMAGVAATSGEGASLLALKLSSALLFSAATGMLLVMNKIQPSQLTEEQRNATRLFRQLQTQIQTTIALGNPTEEDVKGAMEKVLALDRAYPLPLLGAMLEKXPAKFEPAVWWPKTQFQRKNKPQEVKAQSERMNGWSEELEMEMREVVEVVKRKDSEDYERLGNMALKINKTLAIAGPLLTGIAAAGSAFVGHGSWAALVPLMAGSLASAVNAFEHGGQVGMVFEMYRTSAGFFHMLETSIESTLGERDLERRENGEMFEMKMALQLGRILFCCSSSSSKRVVNAAIHIPKLPRVDFSVPKIRSTTKQVXELKLKDTTPLLEKHVSSTQLHDEEQHLTNSKAIVQLYAILEAVADRIETHKNIGEQRDNWNTLLLNSINMITLTATAMAGVAATSGEGAPLLALKLSSTLLFSAATGMLLVMNKIQPSQLTEEQRNATRLFRQLQTQIQTTIALGNPTEEDVKGAMEKVLALDRAYPLPLLGAMLDKFPSKFEPAVWWPKTQFQRNXKAQQVKAQSERMNGWSEELEVEMREVVEVVKRKDSEDYDRLGNXALKINKTLAIAGPXLTGIAAAGSAFVGHGSWAALVPLMAGSLASAVNAFEHGGQVGMVFEMYRTSAGFFHLLETSIESTLGEEDLERRENGEMFEMKMALQLGRSVSNLRELASKSASYPLLINYPLSSSSSSSPSLKRIKCGINNTPKKLPRFSLFSVPKASRRSIVVEEMQRFTDDKEKAPLQKNIDTSKILHHDDXXDDDDXDVYEYDSTNNSMAATVKLYAVLEAVAERIEMHNNMGEQRDNWNTLLLNSINMITLTASTMAGVIGFGGGAPAPAPFLALKLSSALLFSAATGMLLVMNKLQPSQLAEEQRNATRLFKQLQTQIQTKIALGNPIDEHDVMDAMEKVLALDKAYPLPLLGGAMLEKFPAKFEAATWWPSQKKSRVLNKDNKIENENNNGWNEELEKEMREVIEVVKRKDMEDYERLGNIALKMNKALAISGPLFTGIAAVGSVFSGDHGSXVPVIAGALATVVNAFEHGGQVGMVFEMYRNXGGFFELLEETVETTIEEKDMRKRENGELFEMKMALKLGRSVSQLRELAAKSASYRMEGISSLLSSSCSSSKRINSSIPKLPRALSVTPPKPRPSRKLFEELNGRFTHTIPITIQDDQSCNSPTTSSKTTTKLYAILEAVADRIEMHHNVAEQRNNWNTLLLNSINMITLTATAMAGLAAAATSGAAAPLFALKLSSTLLFSASTGMLIVMNKIQPSQLAEEQRNATRLFRQLKSHIETRIALGNPTEKDVKDAMDNVLXIDRAYPLPLIGTMLEKFPEKFEPAVWWPSTKSKTKSFRRINKSQPNGLKNNGWSXGLESDLRDVLEVVKRKDMEDYERLGNLVLKINKTLAIAGPLLTGVAAVGSTFVSQGSWVAMVPVMAGALATAVNSFEHGGQVGMVSEMYRACGGFFQLLESSIQETIMEEDVEQRENGELFEMKLALKLGRSPSQLRDLARKSAYSRVEGTSIDEFASKLF

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00515	81702	95558	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000515s00023224.1	PF14476.1	Chloroplast_duf	83	394	2.00E-148
Glyur000515s00023224.1	PF14476.1	Chloroplast_duf	469	785	4.30E-151
Glyur000515s00023224.1	PF14476.1	Chloroplast_duf	897	1215	2.80E-142
Glyur000515s00023224.1	PF14476.1	Chloroplast_duf	1301	1621	2.40E-144

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.225
SRR1783600	control	0.215
SRR1783602	moderate drought stress	0.153
SRR1811619	moderate drought stress	0.156

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.022
DRR006520	Root Summer glycyrrhizin high producing strain	0.022
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.008
DRR006524	Root Summer glycyrrhizin low producing strain	0.044
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.554
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.624

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.279
SRR2868004	Drought Stress (root)	14.429
SRR2967015	Control (root)	21.747

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.769
SRR9715740	Leaf	2.321
SRR9715741	Leaf	9.850
SRR9715739	Root	1.022
SRR9715742	Root	1.779
SRR9715743	Root	1.465

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	34.605
SRR8749028	MeJA induced 9h	32.979
SRR8749029	MeJA induced 9h	23.220
SRR8749030	Uninduced	296.143
SRR8749031	Uninduced	115.966
SRR8749032	Uninduced	43.621

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.312
SRR8400027	Control - Root	3.015