Gene detail

Gene detail information of Glyur000515s00023218.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G21990.1	0	APS reductase 3
NR	KEH36874.1	0	5'-adenylylsulfate reductase [Medicago truncatula]
COG	YP_005885545.1	1.00E-101	phosphoadenosine phosphosulfate reductase [Marinobacter adhaerens HP15]
Swissprot	tr\|P92980\|APR3_ARATH	0	5'-adenylylsulfate reductase 3, chloroplastic (Precursor)
trEMBL	tr\|A0A072V4H5\|A0A072V4H5_MEDTR	0	5'-adenylylsulfate reductase {ECO:0000313\|EMBL:KEH36874.1}

Sequence

Transcript Sequence

>Glyur000515s00023218.1
GCAGAGGAAAATAAGCAACCAACAGATTTTAGACCCGAATTTCGGTCGGAGCTTTGATTCATAGATTCATTCTCCAATGGCCCTCGCCGTTGCTTCTTCTTCTTCAACATCAAGTTNCTTCTTCTCGCGCCTCGGATCTTCTTCCGACACCAAAGCTACACAAATTGGTTCATTTCGGATTTCGNAGAGACCTCACGTTTCGTCTAGTTCTGTTAATTTACCTCAAAGACGAACCTCTGTGAGGCCTTTGAACGCTGAACCCAAACGGAACGATTTCGTTGTTCCCCTTGCAGCAACTATCGTTGCTCCTGAGGTTACTGAGAAGGAAGAGGAAGATTTTGAACAATTATCGAAAGACCTTGAGAATGCTTCCCCTCTTGAAATAATGGACAAGGCCCTGGAGAAATTTGGCAACGACATCGCTATTGCCTTCAGTGGTGCTGAAGATGTTGCTTTAATTGAGTATGCACATTTGACGGGTCGACCATACAGGGTATTCAGTCTGGACACTGGGAGACTGAATCCAGAAACATATAAATTTTTTGATGCAGTTGAGAAGCATTATGGAATTCGCATTGAGTACATGTTCCCCGATGCGGTTGAGGTTCAGGCATTAGTAAGAACAAAGGGTCTCTTCTCATTTTATGAGGATGGGCATCAAGAGTGCTGCCGAATAAGGAAAGTGAGGCCCTTGAGGAGAGCTCTGAAGGGTCTCAGAGCATGGATAACTGGACAGAGGAAAGATCAGTCACCTGGTACTAGGTCTGAAATACCTGTTGTCCANGTTGATCCAGTTTTTGAGGGATTGGATGGTGGAGTTGGTAGCCTGGTAAAATGGAACCCGGTTGCAAATGCGAAGGGTAATGACATATGGAACTTCCTTAGGACAATGGACGTGCCTATTAATTCATTGCATTTGCAAGGATATGTTTCCATTGGTTGTGAGCCATGCACGAGGCCAGTTTTACCTGGACAACATGAAAGGGAGGGTAGATGGTGGTGGGAGGATGCCAAAGCTAAGGAGTGTGGTCTTCACAAAGGTAATTTGAAACAGGATGATGCTGCCCAACTGAATGGTAATGGAAACGGTGCAGCCCATGCTAATGGCTCTGCCACTGAAACTGACATTTTCAACACCCAGAATGTGGTTAGCTTGAGCAGGGCTGGAATTGAGAATTTGGCAAAATTGGAGAACCGAAAAGAACCATGGCTCGTTGTGCTCTATGCACCATGGTGCCGCTTCTGTCAGGCGATGGAGGAATCTTANGATGACTTGGCAGAGAAGTTAGCAGGGTCAGGAGTGAAGGTTGGAAAATTTAGAGCGGATGGAGACCAAAAAGAATATGCAAAGAGTGAACTGGAGCTGGGAAGCTTCCCCACGATACTTTTCTTCCCCAAACACTCTTCTCGGCCAATCAAGTATCCTTCGGAAAAGAGAGATGCTGATTCATTAATGGCATTTGTGAATGCCTTAAGGTGATGGTCAACTGAGTATTTCGCTCAAGGTTCCGTCGTACAATACCAGCAATAAATTTATCCCCAGATTTTGGCAATTCACTGAAAGTGGGAATGGCAGTTTTGACAGCAAAACGAAGATTCTCAGCTTGTATCTCTGTATAGTTTTAGATAGCCTTCCTCAGAATTAATTGTACTAGCCACTGTGACGAGGATTTGATTTCCTGTTTTTCCAGATGAGTAGATTTATGGTTGGATTATGTTCCTTCAATAATATAAGATTGTAGTTTTTGAGATTTACCAAACTTTCATGGACGAATATCAAANAATAACTGCTACAATAAGGGCTGCACACGATTCAGCTTGTGTTCTGACTTCTGAGGAAAACAATGTTGCGTTGGATTGGTTTTTGTAAGAAGTGCCAGCCAACTGGAACTAAACTAAGGTCAATTTGGATTCCATAATTGGTTTCAGATGTTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00515	34075	36988	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05907	APR	EC:1.8.4.9	Sulfur metabolism	map00920

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0019419 sulfate reduction

GO:0045454 cell redox homeostasis

GO:0055114 oxidation-reduction process

molecular_function

GO:0003824 catalytic activity

GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000515s00023218.1	PF01507.14	PAPS_reduct	115	295	5.00E-42
Glyur000515s00023218.1	PF00085.15	Thioredoxin	370	464	1.60E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	25.314
SRR1783600	control	25.466
SRR1783602	moderate drought stress	24.298
SRR1811619	moderate drought stress	24.036

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	98.183
DRR006520	Root Summer glycyrrhizin high producing strain	96.901
DRR006521	Root Winter glycyrrhizin high producing strain	18.730
DRR006522	Root Winter glycyrrhizin high producing strain	18.168
DRR006523	Root Summer glycyrrhizin low producing strain	49.892
DRR006524	Root Summer glycyrrhizin low producing strain	50.132
DRR006525	Leaf Summer glycyrrhizin high producing strain	99.195
DRR006526	Leaf Summer glycyrrhizin high producing strain	98.731

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	100.552
SRR2868004	Drought Stress (root)	154.693
SRR2967015	Control (root)	49.408

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	229.667
SRR9715740	Leaf	319.626
SRR9715741	Leaf	247.288
SRR9715739	Root	12.962
SRR9715742	Root	45.722
SRR9715743	Root	38.865

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	32.636
SRR8749028	MeJA induced 9h	27.096
SRR8749029	MeJA induced 9h	10.440
SRR8749030	Uninduced	175.008
SRR8749031	Uninduced	54.714
SRR8749032	Uninduced	30.637

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	109.978
SRR8400027	Control - Root	71.112