Gene detail information of Glyur000515s00023211 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G62040.2 | 3.00E-58 | Ubiquitin-like superfamily protein |
| NR | NP_001235145.1 | 2.71E-80 | uncharacterized protein LOC100527884 [Glycine max] |
| Swissprot | tr|Q6Z1D5|ATG8C_ORYSJ | 2.00E-76 | Autophagy-related protein 8C (Precursor) |
| trEMBL | tr|C6T5Q4|C6T5Q4_SOYBN | 1.00E-80 | Autophagy-related protein {ECO:0000256|RuleBase:RU004384} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00515 | 9509 | 11712 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000515s00023211.1 | PF02991.11 | Atg8 | 14 | 117 | 1.90E-51 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 36.737 |
| SRR1783600 | control | 35.552 |
| SRR1783602 | moderate drought stress | 37.228 |
| SRR1811619 | moderate drought stress | 36.365 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 39.954 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 38.790 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 50.039 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 49.343 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 45.189 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 46.112 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.028 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.525 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 66.571 |
| SRR2868004 | Drought Stress (root) | 95.780 |
| SRR2967015 | Control (root) | 84.043 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 44.323 |
| SRR9715740 | Leaf | 54.862 |
| SRR9715741 | Leaf | 64.187 |
| SRR9715739 | Root | 24.562 |
| SRR9715742 | Root | 33.282 |
| SRR9715743 | Root | 29.819 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 207.224 |
| SRR8749028 | MeJA induced 9h | 353.881 |
| SRR8749029 | MeJA induced 9h | 495.601 |
| SRR8749030 | Uninduced | 285.850 |
| SRR8749031 | Uninduced | 587.675 |
| SRR8749032 | Uninduced | 501.595 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 79.558 |
| SRR8400027 | Control - Root | 86.354 |