Gene detail information of Glyur000514s00017585


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G43190.20polypyrimidine tract-binding protein 3
NRXP_006605400.10PREDICTED: uncharacterized protein LOC100819672 isoform X1 [Glycine max]
Swissprottr|Q6ICX4|PTBP3_ARATH0Polypyrimidine tract-binding protein homolog 3
trEMBLtr|I1NH38|I1NH38_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G30820.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold00514112118118862+


Gene family

Gene familysubfamily
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KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

biological_process

GO:0006397  mRNA processing


cellular_component

GO:0005634  nucleus


molecular_function

GO:0000166  nucleotide binding

GO:0003676  nucleic acid binding

GO:0003723  RNA binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000514s00017585.1PF13893.1RRM_522783.70E-09
Glyur000514s00017585.1PF13893.1RRM_51161749.50E-11
Glyur000514s00017585.1PF13893.1RRM_52733283.60E-14
Glyur000514s00017585.1PF00076.17RRM_13714343.00E-09
Glyur000514s00017585.2PF13893.1RRM_522783.70E-09
Glyur000514s00017585.2PF13893.1RRM_51161749.50E-11
Glyur000514s00017585.2PF13893.1RRM_52733283.60E-14
Glyur000514s00017585.2PF00076.17RRM_13714343.00E-09
Glyur000514s00017585.3PF13893.1RRM_510686.30E-11
Glyur000514s00017585.3PF13893.1RRM_51672222.40E-14
Glyur000514s00017585.3PF00076.17RRM_12653281.90E-09
Glyur000514s00017585.4PF13893.1RRM_510686.30E-11
Glyur000514s00017585.4PF13893.1RRM_51672222.40E-14
Glyur000514s00017585.4PF00076.17RRM_12653281.90E-09
Glyur000514s00017585.5PF13893.1RRM_510686.30E-11
Glyur000514s00017585.5PF13893.1RRM_51672222.40E-14
Glyur000514s00017585.5PF00076.17RRM_12653281.90E-09
Glyur000514s00017585.6PF13893.1RRM_522782.30E-10
Glyur000514s00017585.7PF13893.1RRM_522782.30E-10
Glyur000514s00017585.8PF13893.1RRM_522782.30E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.593
SRR1783600control11.730
SRR1783602moderate drought stress21.711
SRR1811619moderate drought stress21.737

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain27.701
DRR006520Root Summer glycyrrhizin high producing strain27.853
DRR006521Root Winter glycyrrhizin high producing strain38.719
DRR006522Root Winter glycyrrhizin high producing strain26.691
DRR006523Root Summer glycyrrhizin low producing strain35.120
DRR006524Root Summer glycyrrhizin low producing strain35.266
DRR006525Leaf Summer glycyrrhizin high producing strain12.271
DRR006526Leaf Summer glycyrrhizin high producing strain12.214

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)30.832
SRR2868004Drought Stress (root)33.728
SRR2967015Control (root)38.934

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf20.849
SRR9715740Leaf21.221
SRR9715741Leaf23.981
SRR9715739Root11.487
SRR9715742Root11.714
SRR9715743Root10.258

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h36.737
SRR8749028MeJA induced 9h64.310
SRR8749029MeJA induced 9h37.567
SRR8749030Uninduced66.891
SRR8749031Uninduced109.576
SRR8749032Uninduced179.208

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root24.190
SRR8400027Control - Root21.508

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved