Gene detail

Gene detail information of Glyur000514s00017584

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G43170.9	0	ribosomal protein 1
NR	KHN46406.1	0	60S ribosomal protein L3 [Glycine soja]
COG	YP_003483889.1	5.00E-69	50S ribosomal protein L3 [Aciduliprofundum boonei T469]
Swissprot	tr\|P35684\|RL3_ORYSJ	0	60S ribosomal protein L3
trEMBL	tr\|I1NH37\|I1NH37_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G30810.1}

Sequence

Transcript Sequence

>Glyur000514s00017584.1
ATTTCTTTGTCAACTCGCGTTTATTTTATTTTTTACTCGTCCAATTCTTGTAATGCTGAGGTGGGCTTATGGGTACAATGCAAATCCAAGTTAGAAGGCCCATCCTAATAAAAAGAACTGGCCCATAAAATAAACAAAGCCTCGTGGCCCTCCTCTATAAAAGACTGAGAGATAATAGGGTTTTANGGTCACTGCAACTACACTCAGCCGCAGCAGCAGCAGCAGCAGCACGAGGAGCAGCCTCAGGAGGAGAAGGATGTCTCACAGGAAGTTCGAACACCCCAGGCACGGGTCACTGGGATTTCTCCCAAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGTGAAGGCTTTCCCTAAGGATGACCCATCCAAGCCACCCAAGCTCACTGCCTTCTTGGGTTACAAGGCTGGTATGACTCACATTGTTCGAGAGGTCGAGAAACCAGGATCAAAGCTTCACAAGAAGGAGACTTGTGANCCAGTTACAATCATTGAGACCCCTCCAATGGTTATTGTTGGTGTTGTGGGTTATGTGAAAACTCCTCGTGGTCTTCGAACATTGAACACTGTATGGACTCAGCATTTGAGTGAGGAAGTGAAGCGTAGGTTCTATAAGAACTGGTGCAAGTCCAAGAAGAAGGCTTTCACCAAGTACTCAAAGCAGTATGAAACTGAAGAAGGGAAGAAAAACATTCAGTCACAGCTTGAAAAACTAAAGAAGTATGCTACTGTCATCCGTGTTTTGGCTCACACTCAGATTAGGAAAATGAAGGGGTTGAAGCAGAAGAAAGCCCATATCATGGAGATNCAGGTTAATGGTGGGACTATTGCTCAGAAGGTGGACTTCGCNTACAGCTTTTTTGAGAAACAGGTGCCCATTGATGCTGTGTTCCAAAAGGATGAAATGATTGACATCATTGGGGTGACAAAGGGTAAGGGTTATGAAGGTGTTGTAACTCGTTGGGGTGTTACGCGCCTTCCCCGTAAGACTCACAGGGGTTTGAGGAAGGTGGCATGTATTGGTGCTTGGCATCCTGCAAGAGTTTCTTTCACTGTTGCCAGGGCTGGTCAGAATGGATACCATCACAGAACTGAGTTGAACAAGAAGATTTACAAGCTTGGCAAAGCTGGAGATGAGTCTCATGCTGCCCTTACCGAGTTTGATAGGACTGAGAAAGACATTACCCCAATGGGTGGTTTCCCACATTACGGTATTGTGAAGGATGATTATCTCATGATCAAGGGAGGCTGTGTTGGTCCCAAGAAAAGGGTTATTACTTTGCGCCAATCTCTGCTTAAGCAGACTACTCGTGTTGCACTGGAGGATATCAAACTCAAGTTTATTGACACCTCTTCAAAGTTCGGGCATGGTCGCTTCCAGACAACACAAGAGAAGCAAAAGTTCTATGGACGCCTCAAGGCATAATTATGATAATTGGATGGAAATGCTGGAACGTGTTTGTGTTATATTTGGTGACCATCTCTTTCAAACTTCGTAGTGTTTTCCATTTGAAATTTGGTAACTCATGGATGCTTGGGTTAGCTGAGTTTTTCTATTATTTGGCCAAACTTTTGTTTCAAGTGGGATTGAGTTCTCAAAATACTTCCAATTTTGGTTTTTTTAATGTTATTTTTTAAAATTTCGAATTTATCTATGCTTNAGTTTAGGGCGTTCTGCATAATGCTTTGATCTATTTAGTTGAAGTTATAANTTCAGAATGCTCCAACGGAAATGGAAATTTGGTACCTTTCGCCGTTCGGAGCATTCTCCTTTAACATTCTCAATCTTGAGACGAGGTGGTTNAGCCTTCTCTGAAACCATTCAAAGTCAAAATGAAAACTTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00514	106463	109769	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000514s00017584.1	PF00297.17	Ribosomal_L3	50	343	4.40E-121

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	159.253
SRR1783600	control	159.204
SRR1783602	moderate drought stress	159.603
SRR1811619	moderate drought stress	158.902

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	359.268
DRR006520	Root Summer glycyrrhizin high producing strain	355.567
DRR006521	Root Winter glycyrrhizin high producing strain	180.273
DRR006522	Root Winter glycyrrhizin high producing strain	175.562
DRR006523	Root Summer glycyrrhizin low producing strain	270.046
DRR006524	Root Summer glycyrrhizin low producing strain	270.440
DRR006525	Leaf Summer glycyrrhizin high producing strain	88.253
DRR006526	Leaf Summer glycyrrhizin high producing strain	87.496

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	625.789
SRR2868004	Drought Stress (root)	357.181
SRR2967015	Control (root)	364.140

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	188.199
SRR9715740	Leaf	175.824
SRR9715741	Leaf	152.489
SRR9715739	Root	161.222
SRR9715742	Root	286.319
SRR9715743	Root	257.670

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	471.606
SRR8749028	MeJA induced 9h	233.569
SRR8749029	MeJA induced 9h	285.251
SRR8749030	Uninduced	35.266
SRR8749031	Uninduced	25.977
SRR8749032	Uninduced	47.745

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	404.453
SRR8400027	Control - Root	338.794