Gene detail

Gene detail information of Glyur000514s00017578

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G31500.1	6.00E-99	cytochrome P450, family 83, subfamily B, polypeptide 1
NR	XP_003589394.1	0	Cytochrome P450 [Medicago truncatula]
COG	YP_004303682.1	6.00E-33	cytochrome P450 [Polymorphum gilvum SL003B-26A1]
Swissprot	tr\|O65782\|C83B1_ARATH	7.00E-133	Cytochrome P450 83B1
trEMBL	tr\|G7I6G8\|G7I6G8_MEDTR	0	Cytochrome P450 family 71 protein {ECO:0000313\|EMBL:AES59645.2}

Sequence

Transcript Sequence

>Glyur000514s00017578.1
ATGTCGTTGCGCTTTGGCTCTAAGCCAACCCTGGTGGTTTCCTCAGCAAAAATGGCCAAAGAAGTGTTGAAAACACATGACCTCAAGTTTGCAAGTAGGCCACGTTTCCTTGGCATGAGGAAACTGTCTTACAATGGCTTGAACTTGGGTTTTGCACCCTATGGCCCTTATTGGAGAGAGATGAAGAAACTCTTTGTCCTCCACCTTTTCAGCTCCCAACGTGTCCATTCTTTCCGTCCCATTCGAGAAAACGAAGTTTCCCAATTGATTCAAAAGATATCAAAACATGAAGTAGTCAACTTGACTGAAACATTGATGTCTTTCAACAACTCCATCATATGTAGGATCGCTTTCGGGAAAAAGTATGTTCCTGATTATGAGGAAGGATTGGGAGGAAGTGGGAAAAGTAGGTTGCGGGTGCTGCTCAATGAGGCTCAGGCTTTGTTGACAGAATTTTACTTCTCAGATCNTTTTCCATTGATGGGGTGGGTTGATAGACTCAGGGGAACGCTGTGGAGGCTTGATAAAACCTTCAAGGAGTTGGATATGTTGTACCAACGTGTTATCGATGATCACATGGATGCAGCCACGGCTAGGCCTAAAACCAGTGACCAACAAGTAGCAGATATCATTGACATGTTTTTGGAGATGATGAATGATCACTCATTCTCTTTTGATCTCACTTTCGACCACATCAAAGCCATGCTTATGAACATCTTTATAGCAGGAACGGACACGGGTTCAGCAACAATGATTTGGGCCATGACAGCACTGTTGAGCAATCCGAGAGTGATGAAAAAGGTTCAAGGGGAGATTAGAAGCTTATTCGGGGGCAAAGATTTTATAAATGAGGATGACATTGAGAGGCTTCCTTATCTCAAAGCAGTGGTGAAGGAGACCCTGAGACTGTTTCCACCGNCACCNTTACTATTGCCAAGAGAGACGATGGAAAGGTGTGAGGTTGATGGGTATGAGATTGAAGCCAGAACACTAGTGTATGTTAATGCGTGGGCCATAGCAAGGGACCCTGAGAGTTGGGAAGAACCCGAAGAGTTTTATCCTGAAAGGTTCCTTGATGGGGGTTCATCTTCTTCATCGGTGGAGTTCAAAGNGACNGATTTTGAGATGATACCGTTTGGGGGTGGACGGAGAATGTGCCCCGCCATGAACATGGGAGTGGTCACGGTTGAGCTCTCNCTTGCTAATCTCCTCCACTCGTTTGATTGGGAACTGCCACGTGGTGTTGACAAGTTGGACACGGAAACTACTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00514	69068	71920	-

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP83B1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000514s00017578.1	PF00067.17	p450	2	422	3.40E-83

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.929
SRR1783600	control	1.270
SRR1783602	moderate drought stress	1.363
SRR1811619	moderate drought stress	1.648

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.164
DRR006520	Root Summer glycyrrhizin high producing strain	3.081
DRR006521	Root Winter glycyrrhizin high producing strain	0.794
DRR006522	Root Winter glycyrrhizin high producing strain	0.967
DRR006523	Root Summer glycyrrhizin low producing strain	1.394
DRR006524	Root Summer glycyrrhizin low producing strain	1.058
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.357
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.905

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.419
SRR2868004	Drought Stress (root)	5.379
SRR2967015	Control (root)	5.313

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	40.644
SRR9715740	Leaf	57.901
SRR9715741	Leaf	41.133
SRR9715739	Root	0.142
SRR9715742	Root	2.143
SRR9715743	Root	1.841

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.897
SRR8749028	MeJA induced 9h	4.974
SRR8749029	MeJA induced 9h	1.351
SRR8749030	Uninduced	4.457
SRR8749031	Uninduced	2.119
SRR8749032	Uninduced	2.252

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.285
SRR8400027	Control - Root	1.195