Gene detail

Gene detail information of Glyur000514s00017576.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G44080.1	2.00E-35	Basic-leucine zipper (bZIP) transcription factor family protein
NR	XP_004496459.1	5.25E-96	PREDICTED: G-box-binding factor 4-like isoform X3 [Cicer arietinum]
Swissprot	tr\|P42777\|GBF4_ARATH	3.00E-43	G-box-binding factor 4
trEMBL	tr\|V7BCH8\|V7BCH8_PHAVU	3.00E-88	Uncharacterized protein {ECO:0000313\|EMBL:ESW15544.1}

Sequence

Transcript Sequence

>Glyur000514s00017576.1
CAGGAAGGCATTTGGGGTGTGGAGTCTGCAGCTAGTCCACTCTCAAACAAGCCAGAAAGAACTGCAACAAGGGCAACAAACAACCTCACACAGACACAACCCCAAATCGAAAAACCCTCCCCTCAGAGAGAGAGAGAGAGAGAGAAACGGTTCGATCGATGGCATCGTCGAAGCTGATGGCGTCTTCCAATTCGAGACAACCGGATCCATCTCAACGACCCCCTTCCCCTTCTCCCAAACCCCAATTCACCACCGCCAATTTCCTACCTATCTCAGACGACTCCTCCCTCCTTGACGCCCAAATCACCCTCGACGCCGCCGCCGCAGCTCCTCCCAAAACCGTCGACGACGTGTGGCGGGAGATCGTCNCCGGCGACCGTAGGGAGTGCAAGTTGGAGGCACCCGACGAGATGATGACCCTCGAGGATTTCCTCGTCAAGGCCGGCGCTGTCGACGACGACGCCGAAGACGACTGCGAGATCAAGATGCCGATGCCCCTCTCGGAGACCCTCAGCGGCGGCGNATTTGCTCTGGATACTCAATTTCAGGGGCTGGAGAGCGTAGAAGGGTCAGTGATTGGGTTCGGGAATGGGGTGGAAGTTGCTGAAGGAGGCAGAGGAAAAAGGGGACGCCCTGTTTTGGAACAGTTGGATAAGGCTGCGCAACAGAGACAGAGGAGAATGATCAAAAACAGAGAATCTGCTGCTAGGTCACGGGAACGCAAGCAGGCNTACCAAGTTGAATTGGAGTCCTTGGCGGTGAAACTAGAGGAGGAAAATGACAAGCTGTTGAAGGAAAAGGTGATGTGTTTTTGTCCCTCAGCACGATTTCCTACGACTTCACTNTGTTCTTCATCGCCTGCTGGCTGCTGCTTTTGTTTCTGCCGTGGGCTTCAATCCGTGAACATGTGGGATTGCATTGCTGGGCCTTTAACTAACAAGTTTGCAACTCCTTCTTGTAATGCTNTCATCATAAATGGGTTTACAATATTATTCTCATTCATCGGTCATCCATGCATTATTGCTGTCTATCATCTTTCCAGGAATCTTGTAATATTAAAGGATTCAGCAACCATGGTTATTTCTAATTGCGCTGAGAGGAAAAAGGAGAGGTTCAAGCAGCTTATGGAAAAAGTGATCCCTGTTGTGGAGAAGCGAAGGCCGCCACGGTTACTCCGTAGGATTCGCTCCTTGCAGTGGTAGATCATATTTGCTAGTGGTGCAGGATGGGAACTGAAGATCCACCACTGATGTGGTGGGTGAAATAATACCATAGGCAAACTAATCATCATCTCTTGAATCAAAGTTCCCAATCTAACGGTTAGTCTCAAGGGTAACCCGTGTTAATGATATGAAGAGATAGAAGGAATTGAAACATGAGTCGCGAAGGGAAATTCCAATTACATAAGAGATAAAAAGCAGAAGCATATAGTTGGAGCATGTAGTTTAGAGACGANGTAGGCATCCTGGTCTCTCCCTTCCCTTGTGCAGAATGCAAATGTTTTGCCATTAGAGATAGCAAAGGGGATTTCTGGACTAGTATATAATGTAGTCATGGTTTAGACAGATATTATTTAGAGAAAAAAATATATAGAAATTGGTTNTTGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00514	61593	64873	+

Gene family

Gene family	subfamily
Transcription Factors Family	bZIP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000514s00017576.1	PF00170.16	bZIP_1	168	213	5.40E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	44.978
SRR1783600	control	43.635
SRR1783602	moderate drought stress	62.360
SRR1811619	moderate drought stress	60.186

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	47.980
DRR006520	Root Summer glycyrrhizin high producing strain	47.215
DRR006521	Root Winter glycyrrhizin high producing strain	28.685
DRR006522	Root Winter glycyrrhizin high producing strain	27.284
DRR006523	Root Summer glycyrrhizin low producing strain	57.542
DRR006524	Root Summer glycyrrhizin low producing strain	57.134
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.738
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.101

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.488
SRR2868004	Drought Stress (root)	47.194
SRR2967015	Control (root)	49.022

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	29.226
SRR9715740	Leaf	35.960
SRR9715741	Leaf	34.919
SRR9715739	Root	32.045
SRR9715742	Root	36.448
SRR9715743	Root	32.204

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.115
SRR8749028	MeJA induced 9h	21.894
SRR8749029	MeJA induced 9h	13.671
SRR8749030	Uninduced	10.841
SRR8749031	Uninduced	5.225
SRR8749032	Uninduced	6.774

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	60.174
SRR8400027	Control - Root	48.037