Gene detail information of Glyur000514s00017573 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G43580.1 | 3.00E-159 | Sphingomyelin synthetase family protein |
| NR | XP_003556155.1 | 0 | PREDICTED: uncharacterized protein LOC100818599 [Glycine max] |
| trEMBL | tr|I1NH32|I1NH32_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G30750.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00514 | 37225 | 39809 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000514s00017573.1 | PF14360.1 | PAP2_C | 275 | 342 | 2.00E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 49.027 |
| SRR1783600 | control | 49.489 |
| SRR1783602 | moderate drought stress | 43.403 |
| SRR1811619 | moderate drought stress | 43.607 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 32.094 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 30.906 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.551 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.397 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 27.942 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 27.325 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.193 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.411 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 39.751 |
| SRR2868004 | Drought Stress (root) | 28.316 |
| SRR2967015 | Control (root) | 32.191 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.007 |
| SRR9715740 | Leaf | 12.874 |
| SRR9715741 | Leaf | 13.487 |
| SRR9715739 | Root | 25.722 |
| SRR9715742 | Root | 32.054 |
| SRR9715743 | Root | 26.693 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 27.711 |
| SRR8749028 | MeJA induced 9h | 12.698 |
| SRR8749029 | MeJA induced 9h | 9.075 |
| SRR8749030 | Uninduced | 1.339 |
| SRR8749031 | Uninduced | 0.397 |
| SRR8749032 | Uninduced | 1.188 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 42.110 |
| SRR8400027 | Control - Root | 41.298 |