Gene detail

Gene detail information of Glyur000514s00017572

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G76760.1	3.00E-34	thioredoxin Y1
NR	NP_001237043.1	3.39E-45	uncharacterized protein LOC100306580 [Glycine max]
COG	YP_007079194.1	2.00E-25	thioredoxin [Pleurocapsa sp. PCC 7327]
Swissprot	tr\|Q6NPF9\|TRXY1_ARATH	2.00E-42	Thioredoxin Y1, chloroplastic (Precursor)
trEMBL	tr\|C6SZZ6\|C6SZZ6_SOYBN	1.00E-45	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G36870.1}

Sequence

Transcript Sequence

>Glyur000514s00017572.1
TCGGACTCTTTTGTTTGCTTTAGATATTATTTTATATGTTTGTCGATTCCAAACAGATATTTTGATTTTCCTTTGCTTTTTATTGTTTTCTGATTATTATCCAATCCAAACAGACATTTTTTCTCTCCGTTCGTCGTTCGTATCGTTCGTTGCCATGGCAGTGTCCGTTTCAGCGTCCTCCGTAATCCCTTGTTTGAACTCTTTCTTCCACACGTTTGGGAGCTGTATCTGCATCTTCCCCCACGAAGCTGCAATTCCCGGTTCGCACTCGCCTTCTTCGGATAGGGACTCGCCGCCTTCCCTCTTCCTCGCGCCGTCGATTCCTTCCTCTGGTTCAAGCAAAGAAACAAACCTTTTTCCTCTTTTGATGATTTGCTTGCTAATTCTGATAAACCTGTTATTGGTTGACTTCTATGCTACCTGGAGGGAGCATTTGACAGCAGATCAGCTGATTGAACGCATAGAAACCAGTCTCAAAGTTGATGACTATAAGAAGGAGGAGAAGCACCACAAGCATCTTGAGCACCTTGCTGAGATCACTTCTGCATCTGCTAGTGCTTTTGCCTTGAAACACAAGGCAGAGAAAGACCCGGAATACGCTCACAAGCACAAGATAGAAGAGGAGGTTGCAGCTGCTGCTGCAGTGGGAGCTGGTGGGTTCAAGCAAAGAAACAAACCTTTTCCTCTTTTGATGATTTGCTTGCTAATTCTGAGAAACCTGTGTGGTCCTTGTCAATTCATGGTTCCCATTCTCAATGAAGTAAGCACTCGGCTTCAAGATAAGATACAGGTAGTGAAGATTGATACTGAGAAGTATCCTAGCATTGCTGACAAATACAAAATTGAGGCATTGCCAACTTTCATCGTGTTTAAGGATGGAAAACCCCATGATCGCTTTGAGGGAGCATTGACAGCAGATCAGCTGATTGAACGCATAGAAACCAGTCTCAAAGTTAAGCAATAACCCTGCTAAAATGAAGACACAGAAGCTTGTCTATTGGAAATGTTGGATCACATACATGGTTGGATAGGAGGATCACACTGCTGTTTCAACTTCATTCAGACCCTTTTTTTAGGGTAGTTATTACATTATTTATGCTAAGACACAGACCTATAAAAAAATTGATTGTTCACTTAGCAGTGTGGCAATTTTTAAAAAGTTCACTAGTAAACCTGGTTATGTTTGTGAGTTCCTCAGTATCTTTTTTGTGTGTTTTTTGTTCGGTCATTGAGTTCCNCAATATCTTAATTCTCTCGTCTCTACTCGATTTATAATTTACTTTCGTTTTCCAAGGTTTAGAAACAAATTGCAAGTGTACGGAAGTTGAAGTTGGTTTCTTGTTCGATAAGCACAGATTCCATCGCATCAGAAAAAGATGAACCATGGATGAATGTTTTGCAATAATGCATATAGGTCACATTACGACCCTGATATGGCAAGCGTGATGCTGCCCATAATCGATGCTAACACGAGCACTTGTCATTGCTTAATAATTGATTGTGGTTGCATGGTTAGATGCATGTGTGTAACACATGCACCCTCCAATATCAAACAATTTAGTGTAATACACACATGCACCCTCCAATATCAAACAATTTAGTGTAACACATGTAATGTGCCCTCCAATATCAAACGATAAAGTGCAATACATGCAACTTCAAATGTCGATGTGTGCCGTTCAATGTCATGAAGGGGGTACTAACTTTACTTACCACAATGCCATCGGCCATATTTCAATGACAAACTTTAGACTTGCCGCCATTGNCTTCAGCCATTAATAACATTGCATATGTGGATTTCCTATCCCGCTGTTTTTGTTTGTTTGTTATATGTAATCAAAATCTTTAAGATCCCATTCAACTACTAGAAGGTAATATAGCCTTGGACATGCATGACCCACCAGCATCTGGGTGAAGTTTTAGGATTACAATGGCATCACTACGGATGAGTTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00514	18358	36601	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006662 glycerol ether metabolic process

GO:0006950 response to stress

GO:0045454 cell redox homeostasis

molecular_function
GO:0015035 protein disulfide oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000514s00017572.1	PF02496.11	ABA_WDS	111	170	8.10E-23
Glyur000514s00017572.1	PF00085.15	Thioredoxin	188	263	8.80E-19
Glyur000514s00017572.2	PF00085.15	Thioredoxin	80	155	2.80E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.379
SRR1783600	control	17.374
SRR1783602	moderate drought stress	16.365
SRR1811619	moderate drought stress	16.255

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.899
DRR006520	Root Summer glycyrrhizin high producing strain	19.731
DRR006521	Root Winter glycyrrhizin high producing strain	14.721
DRR006522	Root Winter glycyrrhizin high producing strain	13.382
DRR006523	Root Summer glycyrrhizin low producing strain	16.253
DRR006524	Root Summer glycyrrhizin low producing strain	16.814
DRR006525	Leaf Summer glycyrrhizin high producing strain	118.559
DRR006526	Leaf Summer glycyrrhizin high producing strain	123.990

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.970
SRR2868004	Drought Stress (root)	15.277
SRR2967015	Control (root)	17.433

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	47.927
SRR9715740	Leaf	61.854
SRR9715741	Leaf	23.504
SRR9715739	Root	6.112
SRR9715742	Root	9.122
SRR9715743	Root	9.200

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.285
SRR8749028	MeJA induced 9h	8.724
SRR8749029	MeJA induced 9h	10.140
SRR8749030	Uninduced	17.406
SRR8749031	Uninduced	15.703
SRR8749032	Uninduced	14.209

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.667
SRR8400027	Control - Root	18.531