Gene detail information of Glyur000514s00017571 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G34030.1 | 3.00E-74 | Ribosomal protein S13/S18 family |
| NR | KHN46413.1 | 4.83E-106 | 40S ribosomal protein S18 [Glycine soja] |
| COG | YP_447903.1 | 2.00E-41 | 30S ribosomal protein S13P [Methanosphaera stadtmanae DSM 3091] |
| Swissprot | tr|P34788|RS18_ARATH | 6.00E-106 | 40S ribosomal protein S18 |
| trEMBL | tr|C6T048|C6T048_SOYBN | 7.00E-106 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G30970.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00514 | 15910 | 17794 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000514s00017571.1 | PF00416.17 | Ribosomal_S13 | 14 | 142 | 1.00E-40 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.246 |
| SRR1783600 | control | 19.073 |
| SRR1783602 | moderate drought stress | 17.451 |
| SRR1811619 | moderate drought stress | 17.389 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 41.479 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 40.935 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.050 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.711 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 32.304 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 32.129 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.956 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.511 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 56.720 |
| SRR2868004 | Drought Stress (root) | 28.048 |
| SRR2967015 | Control (root) | 22.781 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 54.569 |
| SRR9715740 | Leaf | 42.004 |
| SRR9715741 | Leaf | 33.311 |
| SRR9715739 | Root | 56.170 |
| SRR9715742 | Root | 47.429 |
| SRR9715743 | Root | 44.284 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 45.222 |
| SRR8749028 | MeJA induced 9h | 17.012 |
| SRR8749029 | MeJA induced 9h | 27.623 |
| SRR8749030 | Uninduced | 2.500 |
| SRR8749031 | Uninduced | 1.173 |
| SRR8749032 | Uninduced | 3.824 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 70.140 |
| SRR8400027 | Control - Root | 58.090 |