Gene detail information of Glyur000514s00017569 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G18740.1 | 5.00E-144 | Protein of unknown function (DUF793) |
| NR | XP_003592100.1 | 0 | hypothetical protein MTR_1g098700 [Medicago truncatula] |
| Swissprot | tr|Q337C0|U496D_ORYSJ | 1.00E-11 | UPF0496 protein 4 |
| trEMBL | tr|G7IBZ7|G7IBZ7_MEDTR | 0 | Plant/F1M20-13 protein {ECO:0000313|EMBL:AES62351.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00514 | 2724 | 3935 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000514s00017569.1 | PF05633.6 | DUF793 | 1 | 396 | 1.90E-172 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.605 |
| SRR1783600 | control | 18.479 |
| SRR1783602 | moderate drought stress | 11.931 |
| SRR1811619 | moderate drought stress | 12.381 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 198.172 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 197.402 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.685 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.606 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 357.171 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 355.061 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 96.438 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 96.562 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 38.680 |
| SRR2868004 | Drought Stress (root) | 60.415 |
| SRR2967015 | Control (root) | 233.707 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 455.918 |
| SRR9715740 | Leaf | 345.452 |
| SRR9715741 | Leaf | 474.453 |
| SRR9715739 | Root | 708.573 |
| SRR9715742 | Root | 705.202 |
| SRR9715743 | Root | 839.452 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 88.966 |
| SRR8749028 | MeJA induced 9h | 65.829 |
| SRR8749029 | MeJA induced 9h | 84.497 |
| SRR8749030 | Uninduced | 58.488 |
| SRR8749031 | Uninduced | 63.763 |
| SRR8749032 | Uninduced | 36.270 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 33.682 |
| SRR8400027 | Control - Root | 78.325 |