Gene detail

Gene detail information of Glyur000513s00025382

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G46210.1	0	Fatty acid/sphingolipid desaturase
NR	XP_003517965.1	0	PREDICTED: delta(8)-fatty-acid desaturase-like [Glycine max]
COG	YP_002880693.1	7.00E-39	fatty acid desaturase [Beutenbergia cavernae DSM 12333]
Swissprot	tr\|Q3EBF7\|SLD2_ARATH	0	Delta(8)-fatty-acid desaturase 2
trEMBL	tr\|I1J5P4\|I1J5P4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G05470.1}

Sequence

Transcript Sequence

>Glyur000513s00025382.1
ATGGAGGGTGAGAAAAAGTACATCACCTCAGAGGAGCTGAAGGGGCACAACAAGGAAGGGGATTTATGGATCTCAATTCAGGGAAAAGTGTACAATGTCACAGATTGGGTCAAGGATCACCCAGGTGGTGATGTTCCCATAATGAACCTTGCAGGCCAAGATGTCACTGATNCATTCATAGCCTACCACCCAGGCACAGCATGGAAGCACCTTGAAAACTTCTTCACTGGGTACCACCTAATTGATTTCAAGGTCTCTGAGGTTTCAAAAGATTACAGGAAGCTTGCATCTGAGTTCTCAAAATTGGGTCTTTTTGACAAGAAGGAGCATGTCACATCATGCACCCTCACATCAGTTGCATTCATGTTCCTCATTGTCCTCTATGGTGTCATGAGGTGTACAAGTGTTTGGGCTCATTTGGGTTCTGCAATGCTCTTGGGTTTGCTTTGGATGCAAAGTGCTTATGTGGGTCATGATTCAGGCCACTATGTGGTGATGACAAGCAAAGGCTTCAACAAGTTTGCACAGATCCTCTCTGGGAATTGCTTGACTGGGATAAGCATAGCATGGTGGAAGTGGACACACAATGCACACCACATTGCGTGCAATAGCCTTGACCATGACCCTGATCTTCAACACATGCCTGTCTTTGCTGTTTCCTCACGTTTCTTCAGCTCAATCACATCACATTTCTATGGGAGGGAGTTAAAGTTTGATTCTTTGGCAAGGTTTTTGATCAGTTACCAGCACTGGACATTCTACCCAGTCATGTGCATTGCAAGGGTCAATTTGTATGTTCAGACACTTCTCTTGTTGTTTTCAAACCGTAGGGTACCTGATAGAGCATTAAACATAATGGGGATCATGGTATTTTGGACTTGGTTCCCTCTTCTTGTTTCCTTTCTTCCAAATTGGAATGAAAGGGTTATGTTTGTGCTTGCTAGCTTTGCTGTTTGCTCCATTCAGCATATTCAGTTCTGTTTGAACCATTTTGCTGCTAATGTTTATGTTGGGCCACCAAATGGGAATGACTGGTTTGAGAAGCAAACAAGTGGGACATTGGATATCTCTTGTTCATCTTGGATGGATTGGTTCTTTGGGGGTTTGCAGTTCCAGCTTGAGCACCATTTGTTCCCAAGGCTTCCAAGGTGCCAACTGAGGAGGATTTCACCATTGGTGAGAGATCTTTGCAAGAAGCACAACTTGCCTTACAGGAGTTTGTCTTTCTGGGAGGCCAATCAATGGACAATTAGGATCCTCAGGNCAGCTGCATTACAGGCTCAGGATCTCACCAACCCTGTCCCCAAGAATTTGTTGTGGGAAGCTGTCAACACTCATGGCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00513	74687	76030	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006629 lipid metabolic process

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000513s00025382.1	PF00173.23	Cyt-b5	7	78	1.60E-23
Glyur000513s00025382.1	PF00487.19	FA_desaturase	135	407	5.30E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.447
SRR1783600	control	0.487
SRR1783602	moderate drought stress	0.482
SRR1811619	moderate drought stress	0.503

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.448
DRR006520	Root Summer glycyrrhizin high producing strain	3.584
DRR006521	Root Winter glycyrrhizin high producing strain	1.372
DRR006522	Root Winter glycyrrhizin high producing strain	1.252
DRR006523	Root Summer glycyrrhizin low producing strain	0.985
DRR006524	Root Summer glycyrrhizin low producing strain	1.062
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.761
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.759

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.013
SRR2868004	Drought Stress (root)	1.113
SRR2967015	Control (root)	1.990

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.987
SRR9715740	Leaf	1.142
SRR9715741	Leaf	0.547
SRR9715739	Root	0.407
SRR9715742	Root	0.646
SRR9715743	Root	0.339

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.111
SRR8749028	MeJA induced 9h	0.256
SRR8749029	MeJA induced 9h	0.045
SRR8749030	Uninduced	0.047
SRR8749031	Uninduced	0.228
SRR8749032	Uninduced	0.072

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.296
SRR8400027	Control - Root	1.436