Gene detail

Gene detail information of Glyur000513s00025370

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G26840.1	1.00E-80	origin recognition complex protein 6
NR	XP_004490041.1	0	PREDICTED: origin recognition complex subunit 6-like [Cicer arietinum]
Swissprot	tr\|Q9ZVH3\|ORC6_ARATH	6.00E-130	Origin of replication complex subunit 6 {ECO:0000303\|PubMed:16179646}
trEMBL	tr\|A0A072TY04\|A0A072TY04_MEDTR	1.00E-180	Origin recognition complex subunit 6 {ECO:0000313\|EMBL:KEH22312.1}

Sequence

Transcript Sequence

>Glyur000513s00025370.1
ATGGATATCTCAGAGATAGCCAAGAAGCTCGGATTCTCAGATTCCAAACTCATCCGAAAAGCCGCCGAACTCCGTCGCCTCTGCGACGTCCAATTCGATTCATCCATCATCGGAGTCGGTGAAGTCGCGAAAGCTATCATCTGCTTTGAAATCGCCGCCACGAGGCGTGGTGTTCTATTTGATCGATCCTCTGCGGTCAAGCTCAGTGGAATGTCCGAAAGAGCTTATATCAGATCCTACAATTCACTTCACAACGGCCTTGGCGTCAAGTTGAAGCTAGATGTGAGAGAATTAGCGATTCAGTTCGGCTGTGTTCGAATTATACCTTTTGTTCGCGATGGCCTCAAGCNTTATAAGGATCGATTCCTTTCGTCGTTGCCGGCCTCTCGCCGCGCGAGTGCGGATTTTACTCGTCCGGTGTTCACTGCTGTTGCTTTTTATTTATGTGCAAAGAAACACAAGCTCAAAGTTGACAAGCTTAAGCTAATTGAATTATGTGGTACATCTGAATCTGAATTCTCTAGCGTTTCTACTACTATGAAGGACCTGTGCCATGATGTTTTTGGGGTTGCGAAGGAAAAGAAAGATGCTAGGGAAGTAAAGACAAATCGAGATCTGCTTGATGTATTACCAGACAAAAGGAAGCCTGAGGATGGTGGATATTTGTCTGATGACGGGGCAGAGGTTTCAAGTTATAAAAAAAGGAAACAAATGGAAAAACGTGATTACGAGAAGTGGAAATCTTCAGTCCTTGCATCCAATAAACAAAACAAGACAGAAGCGCCTTGCAAGCGAACCAAGCAGACTAGCCTTGACTTTCTCAAGGAAGCTCCCGATATCCAGAAGTTGGAGGCAATATGAGATGGTATTGCTCCCTTTTGTGACNAAAGAAGATTTTGGGGATGTTTAGCGCAGTATGAAACAAAAGGATGAAGATAGCATTAACCGGAAGAACTCTGTACAGACTGGCACTTTTTAAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00513	31682	34603	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006260 DNA replication

cellular_component
GO:0005664 nuclear origin of replication recognition complex

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000513s00025370.1	PF05460.8	ORC6	6	90	3.90E-13
Glyur000513s00025370.2	PF05460.8	ORC6	6	90	3.90E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.963
SRR1783600	control	2.931
SRR1783602	moderate drought stress	0.865
SRR1811619	moderate drought stress	0.899

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.161
DRR006520	Root Summer glycyrrhizin high producing strain	2.401
DRR006521	Root Winter glycyrrhizin high producing strain	0.507
DRR006522	Root Winter glycyrrhizin high producing strain	0.491
DRR006523	Root Summer glycyrrhizin low producing strain	1.469
DRR006524	Root Summer glycyrrhizin low producing strain	1.674
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.500
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.496

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.358
SRR2868004	Drought Stress (root)	5.233
SRR2967015	Control (root)	5.567

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.545
SRR9715740	Leaf	0.391
SRR9715741	Leaf	0.943
SRR9715739	Root	0.990
SRR9715742	Root	1.841
SRR9715743	Root	1.304

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.946
SRR8749028	MeJA induced 9h	5.053
SRR8749029	MeJA induced 9h	11.228
SRR8749030	Uninduced	0.244
SRR8749031	Uninduced	2.078
SRR8749032	Uninduced	4.520

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.891
SRR8400027	Control - Root	7.162