Gene detail

Gene detail information of Glyur000513s00025369.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G69640.1	7.00E-106	sphingoid base hydroxylase 1
NR	XP_004490042.1	6.18E-178	PREDICTED: sphinganine C(4)-monooxygenase 1-like [Cicer arietinum]
COG	YP_006433261.1	1.00E-11	sterol desaturase [Flexibacter litoralis DSM 6794]
Swissprot	tr\|Q9AST3\|SBH2_ARATH	9.00E-151	Sphinganine C(4)-monooxygenase 2
trEMBL	tr\|I3T7X2\|I3T7X2_LOTJA	3.00E-177	Uncharacterized protein {ECO:0000313\|EMBL:AFK48614.1}

Sequence

Transcript Sequence

>Glyur000513s00025369.1
ATTCTCTCTCTCTCCCTCTCTCCTTGAATCTTCCTTCTGTTTGAAACCTAACCCTGATTCCGCACATACCGATTATTATTTAATTGGTTTGTCATTGGTTTTGGGTTTGCCGTCAAGTATTTAGGGTTGGAGGAACAAGGGGAGTGAGAGGTTCAATTCAGTTTTTATTAATTCCCAAAAAGGATTAGGGTTTCCTCCTTTGTTATTCATCGTCTCTTTTTTCTGGGTTACTCTGAAATTCATGCGAATTTTGGGTCTGGCGGGTGGTTCCTAAATCAAATCTTAGAAAAAAAATTTTGACTTTCTTTTTCTTCTGGGGGGTGGGAAAATGGATTTGGGGATTTCTGATGAGTTGTTAGGGACTTTTGCTCCAATTTTAGTTTACTGGATTTATTCTGGTATTTATGTTGTTTTGGGGTTGTTTGCTGAAGATTATAGATTACACTCAAAACAGGATGAGGATGAAAAGAATTTGGTATCTAAGGGTGCTGTGGTTAAAGGAGTTCTTCTCCAACAGGCAGTTCAGGCTGTGGTTGCAACCTTCTTGTTTGCGGTGGCAGGAAGTGATAGCCAAAATAGTAGCAGTGAGAATGCTTCTCTCCTTGTTTTAGCAAGACAATTTGTCACTGCTATGTTGGTAATGGACACATGGCAATACTTTTTGCACAGATACATGCATCAGAACAAGTTCCTCTACAAACACATCCACTCTCTACACCACAGACTCATCGTGCCCTATTCGTTCGGTGCCCTGTACAATCATCCCGTGGAGGGGCTTCTCAACGACACCGTGGGCGGGGCTTTATCTTTCCTNATCTCCGGTATGAGTCCCCGAACATCCATCTTCTTCTTCTCGTTTGCCACCATTAAGACCGTCGACGATCACTGTGGGTTATGGCTCCCCGGGAACCTCTTCCAAATAGTTTTCAAGAACAATTCCGCTTACCACGATGTACACCATCAGCTCTATGGCAACAAGTACAACTTCTCACAGCCATTCTTTGTCATGTGGGACAAAATTTTGGGTACCTACATGCCATACACATTGGAGAAAAGGGCAGGTGGGGGTTATGAAACTAGACCTTGTAAAGATTACAAGGATGAATAGCCTTTTTTGCTTGATGAGCATACTTTACGTGTACTAGTATTGTTTTTTTTNCCCTCGTTATGATGATGAGCAGCACTGCCAGAGTGATCATGTCTGTATATACATATGAATATGATGTTGTCCTATTCTATATTTTTCTCTCCCTTCTGTTCATAACTAGATAGATTTAATAAAGAATATTAAGGAGCAACCCATTAGGGTGTGGTTTTCACCCCTTGTATTGCTGGCTGCTGTAGTAAAACTGCATTGTATCCCATTGTTTCTGATATTGTTTAGCTTACGCATGCAGTCTTTGATATCCTAATACTTTATTTGTCTTTGCCGACTTTGTATCTACGATTCTAGTGTTTTTAGAAAGGTCAATTAATTTTTATCGTTGTATCACTAAATGGACATGTCTGCTTTGAAACATGTGTGTACTCCGTGGAGCCCACAATTATGTTATGATTGAATAGATGAGTGTATGTATCCATTAATTTTTTTGTATTATAGTGTACACACTTGATTGTTTGTGGGGACGATGTGTATTCTGATGATAAAAAATGTCAATTTCTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00513	27915	30400	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04713	SUR2	EC:1.14.18.5	Sphingolipid metabolism	map00600

Gene Ontology

biological_process

GO:0006633 fatty acid biosynthetic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000513s00025369.1	PF04116.8	FA_hydroxylase	98	212	3.30E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	26.165
SRR1783600	control	26.421
SRR1783602	moderate drought stress	40.890
SRR1811619	moderate drought stress	40.431

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	69.518
DRR006520	Root Summer glycyrrhizin high producing strain	69.030
DRR006521	Root Winter glycyrrhizin high producing strain	264.605
DRR006522	Root Winter glycyrrhizin high producing strain	258.256
DRR006523	Root Summer glycyrrhizin low producing strain	152.736
DRR006524	Root Summer glycyrrhizin low producing strain	151.557
DRR006525	Leaf Summer glycyrrhizin high producing strain	39.021
DRR006526	Leaf Summer glycyrrhizin high producing strain	39.009

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	47.809
SRR2868004	Drought Stress (root)	66.548
SRR2967015	Control (root)	79.577

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	141.214
SRR9715740	Leaf	139.363
SRR9715741	Leaf	169.209
SRR9715739	Root	228.319
SRR9715742	Root	343.240
SRR9715743	Root	311.097

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	295.450
SRR8749028	MeJA induced 9h	298.956
SRR8749029	MeJA induced 9h	405.396
SRR8749030	Uninduced	267.379
SRR8749031	Uninduced	467.215
SRR8749032	Uninduced	339.480

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	41.783
SRR8400027	Control - Root	88.814