Gene detail

Gene detail information of Glyur000512s00017090

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G42590.2	4.00E-109	general regulatory factor 9
NR	XP_003531255.1	1.68E-157	PREDICTED: 14-3-3-like protein C-like isoform X1 [Glycine max]
Swissprot	tr\|Q96452\|1433C_SOYBN	3.00E-152	14-3-3-like protein C
trEMBL	tr\|Q9FXL1\|Q9FXL1_VICFA	3.00E-155	Vf14-3-3d protein {ECO:0000313\|EMBL:BAB17822.1}

Sequence

Transcript Sequence

>Glyur000512s00017090.1
TGCGACCTACCAATACATTTTGTGTTTGTGTCATTTTTTGTTTCCCCTGGTCTCCTACATACACTCGCATCCTCTCCACTGTCAACCAATCACCTNCAGACACGTGGCAATAAGAACGAAACCCTGACTCTCGCTCTTTCGCTCCTCACTCCTTCACCCTCACAAACCAAAACAAACGGTTGGTTGCGCCATTTCTAGAGCGAAAGAGAAAGCAAAGTTGAGAGGATAGAGAAAGCTCGTAGATCGATCAGCCATGGCATCCTCCAAGGAACGCGAAAACTTAGTTTACGTCGCCAAGCTCTCCGAACAAGCNGAGCGCTACGAAGAAATGGTGGAAGCGATGAAGAATGTGGCGANGCTGAATGTTGAATTGACGGTTGAAGAGCGAAACCTTATGTCCGTTGCGTACAAAAACGTAGTGGGGGCACGCAGGGCTTCGTGGAGGATCATGTCGTCGATTGAGCAGAAGGAGGAAGCGAAAGGGAACGATGTGAATGTGAATCGCATAAAGGAGTACAGGAAGAAGGTGGAATCCGAGTTGACCAATATCTGCACCGATATTATGACTATCATTGACAACCATCTCATTCCCCACTCCTCCGGTGAATCTAATGTCTTTTACTACAAAATGAAGGGTGATTATTACCGTTATCTGGCTGAGTTTACGACTGGGGATGAGAGAAAAGAGGAAGCTTCCACTACAGCAGAGGCTGAGTTACCTCCCACGCATCCTATTAGACTGGGNTTGGCTTTGAACTTCTCTGTCTTCTATTATGAAATTTTGAACTCTCCTGAAAGGGCTTGTCACCTTGCCAAGCAGGCATTTGATGTAGCAATCTCTGAGTTGGATTCTCTCAGTGAGGAATCTTACAAGGACAGCACACTGATCATGCAACTTTTGAGGGACAACCTCACCTTGTGGACTTCTGACATCCCTGAAGAAGGAGCTGAGGAACTAAAGGTGGAATCTGCCCGAGCTCCCGGAGGAGAAAATGCAGAGTAAATAAAGTGGCACAAATATTACCGGGGGTTTGTGGTATGAATACGAGAGACTAGTCTCGATGCAAGCTCTGGATGTTTTCTGTTCCCATGTTTTCTCGCTAAAGAAAGTTTATGGCTTACCATTAGGATGTTTTCACTTGATTTGACAATGGAATGCACNTTGTCAATGTTGCTTTAGGTTCTGTGCACATCTTTCAGCTACTAGAGACTTGAGATCCATGGTTGGCTGTAATTTAATTGGTGCTTTGATTTTATAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00512	133006	136601	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0019904 protein domain specific binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000512s00017090.1	PF00244.15	2014/3/3	7	230	5.80E-106

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.930
SRR1783600	control	22.340
SRR1783602	moderate drought stress	19.429
SRR1811619	moderate drought stress	18.832

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	52.591
DRR006520	Root Summer glycyrrhizin high producing strain	52.551
DRR006521	Root Winter glycyrrhizin high producing strain	74.331
DRR006522	Root Winter glycyrrhizin high producing strain	72.378
DRR006523	Root Summer glycyrrhizin low producing strain	29.213
DRR006524	Root Summer glycyrrhizin low producing strain	28.449
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.803
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.795

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	65.725
SRR2868004	Drought Stress (root)	79.326
SRR2967015	Control (root)	70.287

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.711
SRR9715740	Leaf	24.037
SRR9715741	Leaf	21.304
SRR9715739	Root	37.803
SRR9715742	Root	34.920
SRR9715743	Root	34.603

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	54.253
SRR8749028	MeJA induced 9h	62.430
SRR8749029	MeJA induced 9h	42.944
SRR8749030	Uninduced	32.139
SRR8749031	Uninduced	11.300
SRR8749032	Uninduced	18.330

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	59.610
SRR8400027	Control - Root	67.484