Gene detail information of Glyur000512s00017081 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G53870.1 | 2.00E-28 | Protein of unknown function (DUF567) |
| NR | XP_003627442.1 | 5.77E-101 | hypothetical protein MTR_8g023060 [Medicago truncatula] |
| Swissprot | tr|Q67XV7|LOR3_ARATH | 8.00E-34 | Protein LURP-one-related 3 |
| trEMBL | tr|G7L964|G7L964_MEDTR | 2.00E-101 | Uncharacterized protein {ECO:0000313|EMBL:AFK43179.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00512 | 98342 | 99176 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000512s00017081.1 | PF04525.7 | Tub_2 | 20 | 62 | 1.30E-11 |
| Glyur000512s00017081.1 | PF04525.7 | Tub_2 | 64 | 176 | 6.10E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.618 |
| SRR1783600 | control | 0.606 |
| SRR1783602 | moderate drought stress | 0.354 |
| SRR1811619 | moderate drought stress | 0.168 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.743 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.683 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.083 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.270 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 154.893 |
| SRR2868004 | Drought Stress (root) | 359.989 |
| SRR2967015 | Control (root) | 159.713 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.276 |
| SRR9715740 | Leaf | 2.439 |
| SRR9715741 | Leaf | 7.992 |
| SRR9715739 | Root | 0.418 |
| SRR9715742 | Root | 0.750 |
| SRR9715743 | Root | 0.790 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.394 |
| SRR8749028 | MeJA induced 9h | 54.856 |
| SRR8749029 | MeJA induced 9h | 27.167 |
| SRR8749030 | Uninduced | 196.030 |
| SRR8749031 | Uninduced | 389.606 |
| SRR8749032 | Uninduced | 132.484 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 69.293 |
| SRR8400027 | Control - Root | 27.788 |