Gene detail information of Glyur000512s00017077 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G53860.1 | 7.00E-79 | Remorin family protein |
| NR | XP_003627447.1 | 0 | hypothetical protein MTR_8g023130 [Medicago truncatula] |
| trEMBL | tr|G7L969|G7L969_MEDTR | 0 | Carboxy-terminal region remorin {ECO:0000313|EMBL:AET01923.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00512 | 72320 | 75741 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000512s00017077.1 | PF03763.8 | Remorin_C | 314 | 394 | 8.40E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.237 |
| SRR1783600 | control | 0.349 |
| SRR1783602 | moderate drought stress | 0.158 |
| SRR1811619 | moderate drought stress | 0.207 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.235 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.302 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.526 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.660 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.198 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.261 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.787 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.845 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.530 |
| SRR2868004 | Drought Stress (root) | 4.913 |
| SRR2967015 | Control (root) | 6.277 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.202 |
| SRR9715740 | Leaf | 0.834 |
| SRR9715741 | Leaf | 0.341 |
| SRR9715739 | Root | 0.351 |
| SRR9715742 | Root | 0.774 |
| SRR9715743 | Root | 0.827 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.918 |
| SRR8749028 | MeJA induced 9h | 3.755 |
| SRR8749029 | MeJA induced 9h | 2.842 |
| SRR8749030 | Uninduced | 0.473 |
| SRR8749031 | Uninduced | 2.209 |
| SRR8749032 | Uninduced | 3.014 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.399 |
| SRR8400027 | Control - Root | 1.338 |