Gene detail

Gene detail information of Glyur000512s00017075.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G53840.1	0	pectin methylesterase 1
NR	XP_004510571.1	0	PREDICTED: pectinesterase 3-like [Cicer arietinum]
COG	YP_003404589.1	2.00E-49	pectinesterase [Haloterrigena turkmenica DSM 5511]
Swissprot	tr\|Q43111\|PME3_PHAVU	0	Pectinesterase 3 (Precursor)
trEMBL	tr\|K7KZN7\|K7KZN7_SOYBN	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}

Sequence

Transcript Sequence

>Glyur000512s00017075.1
CCCGATATTATAAAAGGCAACCAAAGTTCCACTAAAAACCAAATCAAACCTATAAACAACACTTGCTATAGATTAGTTCTCAAGACGAATTGTTCAGTTTTCAGTGAACACTATCAGTTGCTCTTCCAAACAGAGGCTGCATTGAGTAAGAGCTAAATGATGGATTCCATCAAGTCCTTCAAAGGGTATGGCAAAGTAGACGAGTTGGAGCAGCAAGCCTTTCGCAAGAAGACCCGCAAGCGCGTGACAATCCTGATCGTCTCCTCCGTCATTCTATTAGCGGTGATCATCGCNGCGGTAGCAGGGATCGTGATACACAAGCGCAACACCTCATCCTCCCCTTCCCCTTCCGANTCGTCCCCACATTTAACCCCTGCCGCGTCACTCAAAGCGGTTTGCGAAGTGACTCAGTACCCTAACTCGTGCTTCGCCGCAATCTCTTCCCTCCCCAACTCCAACACCACCGACCCCGAAGAACTCTTCAAGCTCTCCCTCCGCGTCGCCGTCGACGAGCTCGATAAGCTCACGCGCTTCCACACTAGGCTCCGCGCCAGTGCCGACACGCGCCTCCAGAAGGCCATCGATGTATGCTCCTCCGTCCTCGACGACGCCCTCGACCGCCTCAACGACTCGATCTCCTCCTTCGACGGCGCCGGGAGGGACATTCTCTCGTCGGCGATGGTCGCCGACGTGGAGACCTGGCTCAGCGCCGCCGTCACGGACCACGACACGTGCCTCGACGCCATCGGCGAGGTGAACTCCACCGCCGCGCGCGGCGTTCTCCGGGAGATGGAGGCCGCCATGAAGAACTCCACCGAGTTCGCGAGCAACAGTTTGGCGATCGTGACGAAGATCCTGGGGCTGCTCTCGAAGTTTGACGCGCCGACGCACCACCGGAGGCTTCTCGGAGGGTTCCCGGAGTGGGTTGGCGCGGCGGAGCGGAGGCTTCTGGCGGCGGGGAGTAACGACACGACGCCGGATGCCGTGGTGGCCAAGGACGGCACCGGACAGTACACGACGATCGCAGCGGCGCTGAAGGCGGTGGCAAAGAAGAGCGAGAAGAGGTTCGTGGTGTACGTGAAGAAAGGGGAATACTTGGAGAACATCGATTTGGATAAGAATACGTGGAATGTGATGATCTACGGTGATGGCATGACGGAAACCGTCGTCCACGGTAGCCGGAACTTCATAGACGGCACGCCCACTTTTGAAACCGCCACTTTCGCTGTTAAAGGCAAGGGATTCATTGCTAGAGACATAAAGTTCGTGAACACTGCAGGTGCTTCTAAGCACCAGGCTGTGGCACTGCGATCTGGCTCGGATCGCTCTGTGTTCTACAGGTGTTCATTCGTGGGATACCAGGATACCCTTTATGCACATTCCAACCGCCAGTTCTACCGNGACTGTGACATCACAGGCACCATAGACTTCATATTCGGCAATGCAGCTGTTGTGTTCCAAAGCTGCAGAATCATGCCTAGGCAGCCCCTACCAAACCAGTTCAACACCATCACAGCTCAGGGNAAGAAGGACCCCAACCAGAACACTGGAATTGTGATCCAGAAATCAACCATCACTACCTTGGAAAACGATAATCTCACAGCACCCACGTACCTTGGTAGGCCGTGGAAAGATTACTCCACCACTGTGATCATGCAGACTGATATTGGGTCATTCTTGAAACCAGTGGGGTGGATGAGTTGGGTCGCCAATGTGGACCCTCCAAGTACCATCTTCTATGCTGAGTACNNGAACNCTGGGCCTGGATCTGACGTGTCCCAGAGGGTCAAATGGGCTGGTTATAAGCCCACTCTCTTGGACAGTGATGCAGGGAAATTCACTGTGGACACCTTCATCCAAGGCCCTGAGTGGTTGCCAATTACTGCTGTGAAGTTTGAGTCTACCTNGATTAAACATATTGACTTTGAAGGGAAAAAATACTGCTTGAATATGCTGCCAGCAGCCCAAACAATCTCGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00512	58695	61953	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CE8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0042545 cell wall modification

cellular_component
GO:0005618 cell wall

molecular_function

GO:0004857 enzyme inhibitor activity

GO:0030599 pectinesterase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000512s00017075.1	PF04043.10	PMEI	75	229	5.70E-30
Glyur000512s00017075.1	PF01095.14	Pectinesterase	275	569	2.20E-136

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	59.398
SRR1783600	control	59.794
SRR1783602	moderate drought stress	20.711
SRR1811619	moderate drought stress	20.366

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	139.799
DRR006520	Root Summer glycyrrhizin high producing strain	136.510
DRR006521	Root Winter glycyrrhizin high producing strain	135.648
DRR006522	Root Winter glycyrrhizin high producing strain	131.163
DRR006523	Root Summer glycyrrhizin low producing strain	139.525
DRR006524	Root Summer glycyrrhizin low producing strain	140.998
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.939
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.565

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.024
SRR2868004	Drought Stress (root)	22.249
SRR2967015	Control (root)	30.805

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.803
SRR9715740	Leaf	4.482
SRR9715741	Leaf	8.036
SRR9715739	Root	166.913
SRR9715742	Root	299.976
SRR9715743	Root	272.136

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	134.720
SRR8749028	MeJA induced 9h	305.962
SRR8749029	MeJA induced 9h	235.572
SRR8749030	Uninduced	305.697
SRR8749031	Uninduced	21.913
SRR8749032	Uninduced	51.024

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.477
SRR8400027	Control - Root	44.610