Gene detail

Gene detail information of Glyur000512s00017074

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14310.1	2.00E-118	pectin methylesterase 3
NR	XP_010543030.1	0	PREDICTED: pectinesterase 2-like [Tarenaya hassleriana]
COG	YP_003404589.1	4.00E-42	pectinesterase [Haloterrigena turkmenica DSM 5511]
Swissprot	tr\|P83948\|PME3_CITSI	1.00E-145	Pectinesterase 3 (Precursor)
trEMBL	tr\|G7L9V7\|G7L9V7_MEDTR	6.00E-160	Pectinesterase {ECO:0000256\|RuleBase:RU000589}

Sequence

Transcript Sequence

>Glyur000512s00017074.1
CTTTACCCTTGTACTTTTCCAAACCCACATTCTTCAAATGGACATCCTTCTCTCAACTAAAAAATAAATAAATTTAACCCCAATTTAAAAAAACTAAACCTTAATTAATTATCAGTTATTCTCCAAATCGAACAATATAAGTAACCTGTCCTTCCCCCTTTCTGCACCACACCTTTTCCCTCCCTTTCATATCTTCAACTCTCTGTCTCTCTCTGTTTGTCTCTGTTCAGAAACAAAATAAGCAGAGACACGATGAGCAAGATAAAACAAGCCCNCGCCGGAATCTCCATAGATTCCGGCAACCACATTTCCCCCTCCAAGAAGAAGAAGCTCTTCCTCTCCCTCTTCGCCACCCTTCTCCTCGTAGCCTCCGTGGTAGCCATAGTAGCCGGAGTAACCTCCCACAACAACAACAAAAACAAAAACAACAACAATGCCTCTGCTTCTTCACTCCCTTTCTCCCACCACTCCCACGCGATCATAAAAAGCGCGTGCAGCAGCACACTCTACCCAGAGCTCTGTTTCTCAGCAATATCCTCCGAACCAAACGTCACCCACAAAGTCACAACCCACAAAGACGTCATAGAGCTATCCCTCAACATCACATTCAGAGCAGTNGAACACAACTTCTTCACCGTGGAGAAGCTCCTCGCAAACCGAAAGGGACTCACAAAGAGGGAGAAAACCGCACTCCACGATTGTTTAGAAACCATCGACGAAACCCTCGACGAGCTCAGAGAGGCACAGAAAGACCTCGAACTATACCCCAATAAGGGAAAGAAGACTCTTCACCAACACGTCGATGACCTGAAGACGCTCATCAGCGCCGCCATAACTAATCAGGTGACTTGTTTGGATGGGTTTTCACACGACGGAGCTGACAAGCGCGTGAGGAAGGCTCTGGAAGAAGGACAGGTGCACGTGGAGCACATGTGCAGCAATGCTCTGGCAATGACGAAGAACATGACGGATTCTGATGTAGCAGAGTACGAACAGAGGAACGTGAAGGGGAATAGGAGGTTGTTGGAGGAAGGGGAGAGTGGGGCCGTTGTGGGTGGAAATTTTTTGGCCAGAGACATAACATTCCAAAACACAGCAGGACCCTCAAAGCACCAAGCAGTGGCCCTAAGAGTTGGTGGTGACCTCTCAGCCTTCTACAATTGTGACATCCTAGCATACCAAGACACCCTTTATGTCCACAACAATCGCCAATTCTTTGTGAACTGTCTCATATCAGGGACAGTGGATTTCATCTTTGGTAACTCAGCTGTGGTGTTCCAAAACTGTGACATCCACGCTAGGCGACCCAATTCAGGCCAAAAGAACATGGTCACTGCACAAGGCAGGGTTGACCCAAACCAAAACACTGGCATTGTGATNCAAAAGTGTAGGATTGGTGCCACTAAGGACTTGGAGGCTGTGAAGGGTAGTTTCCCAACTTACCTTGGGAGGCCCTGGAAGGAGTACTCTAGGACTGTGATCATGCAGAGTAGTATCAGTGATGTGATTAACCCTGTTGGGTGGCATGAGTGGAATGGGAACTTTGCTCTGAATACATTGGTTTATAGGGAGTATCAGAATACTGGNCCTGGTGCTGGAACTTCCAAGAGGGTTACTTGGAAAGGGTTCAAGGTCATTACTAGTGCTACTGAGGCCCAGGGTTTTACTGCNGGAAGCTTCATTGGGGGATCTAGCTGGTTGGGCTCTACTGGTTTTCCTTTCTCTCTTGGGTTGTAATTAATTAATTGTGTTGTATTTTGAGTCCTGGTTTTTTCTTTTCATTTTTGTTTTAATTGTGTCATTTGTCTATTCAGTGGTAGAGAGAAACAAAAGTTGACCCCAACAATAACAAATTATAAAAACGGAAAGAGAGAGAGAGAGATCATTGATCAAGATGAAGGGTTTGTCTTTTTTTTTGGTCAAAAAAGGGTTTGTCTTTGACTTGTATTATTAGTTGGATTTTGGAACAAGGCCATGTTCTCTATGTGNCTTTATTTATTGTGATATTGCCACTGGTTGAATAATAACAAATGTATGCCCAAGGTTTCGGCTTCTTCAACAATTGAGTTTTGTTTTGGGTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00512	47219	54607	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CE8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01051	E3.1.1.11	EC:3.1.1.11	Pentose and glucuronate interconversions	map00040

Gene Ontology

biological_process
GO:0042545 cell wall modification

cellular_component
GO:0005618 cell wall

molecular_function

GO:0004857 enzyme inhibitor activity

GO:0030599 pectinesterase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000512s00017074.1	PF04043.10	PMEI	73	234	1.50E-33
Glyur000512s00017074.1	PF01095.14	Pectinesterase	262	479	4.50E-110

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	303.078
SRR1783600	control	306.321
SRR1783602	moderate drought stress	174.814
SRR1811619	moderate drought stress	173.263

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	143.717
DRR006520	Root Summer glycyrrhizin high producing strain	141.820
DRR006521	Root Winter glycyrrhizin high producing strain	2.169
DRR006522	Root Winter glycyrrhizin high producing strain	2.022
DRR006523	Root Summer glycyrrhizin low producing strain	53.415
DRR006524	Root Summer glycyrrhizin low producing strain	53.812
DRR006525	Leaf Summer glycyrrhizin high producing strain	63.754
DRR006526	Leaf Summer glycyrrhizin high producing strain	63.149

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	104.690
SRR2868004	Drought Stress (root)	43.380
SRR2967015	Control (root)	59.954

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	80.475
SRR9715740	Leaf	45.091
SRR9715741	Leaf	56.828
SRR9715739	Root	85.434
SRR9715742	Root	58.465
SRR9715743	Root	62.017

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.398
SRR8749028	MeJA induced 9h	23.020
SRR8749029	MeJA induced 9h	14.997
SRR8749030	Uninduced	0.730
SRR8749031	Uninduced	0.074
SRR8749032	Uninduced	0.500

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	120.380
SRR8400027	Control - Root	143.861