Gene detail information of Glyur000511s00022049 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G15900.1 | 2.00E-114 | TRICHOME BIREFRINGENCE-LIKE 19 |
| NR | KEH25274.1 | 0 | Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein [Medicago truncatula] |
| Swissprot | tr|Q9LFT0|TBL19_ARATH | 3.00E-139 | Protein trichome birefringence-like 19 |
| trEMBL | tr|A0A072U692|A0A072U692_MEDTR | 0 | Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein {ECO:0000313|EMBL:KEH25274.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00511 | 68421 | 70496 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000511s00022049.1 | PF14416.1 | PMR5N | 61 | 114 | 8.20E-21 |
| Glyur000511s00022049.1 | PF13839.1 | PC-Esterase | 115 | 406 | 2.80E-62 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.140 |
| SRR1783600 | control | 0.117 |
| SRR1783602 | moderate drought stress | 0.675 |
| SRR1811619 | moderate drought stress | 0.654 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.528 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.606 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.631 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.563 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 21.759 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.230 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.899 |
| SRR2868004 | Drought Stress (root) | 6.249 |
| SRR2967015 | Control (root) | 5.808 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.708 |
| SRR9715740 | Leaf | 3.825 |
| SRR9715741 | Leaf | 2.693 |
| SRR9715739 | Root | 0.032 |
| SRR9715742 | Root | 1.169 |
| SRR9715743 | Root | 0.836 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.003 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.265 |
| SRR8400027 | Control - Root | 2.815 |