Gene detail

Gene detail information of Glyur000511s00022045.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G15870.1	0	glycosyl hydrolase family 81 protein
NR	XP_003555070.2	0	PREDICTED: endo-1,3(4)-beta-glucanase 1-like [Glycine max]
COG	YP_008154648.1	3.00E-116	hypothetical protein SCE1572_41440 [Sorangium cellulosum So0157-2]
trEMBL	tr\|K7MWG8\|K7MWG8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G05550.2}

Sequence

Transcript Sequence

>Glyur000511s00022045.1
ATGTCTAACAACAGCAACAAGAACACTCCTTTTATCTTCCCACAAACACAATCCACTGTCCTCCCTGACCCCTCCAACTTCTTCTCCCAAAACCTTGTCTCATCCCCTCTCCCCACAAACTCTTTCTTCCAAAACTTTGTCCTAAAAAATGGAGACCAACAAGAGTACATTCACCCTTACCTCATCAAATCCTCAAACTCATCCCTTTNTGTTTCATACCCTTCTCGATCCTTTAACTCAGCTGCCATATTCCAAGTTTTCAATGCTGATCTCACCATCACTTCTTCTCAACAAAATCCCAAGCAAAGTTTAAATGTGGGAAAGCACATAATCTCTTCCTATAGTGATCTCAGTGTCACTTTAGATATCCCTTCTTCCAACCTCAGCTTCTTCCTTGTAAGGGGAAGTCCCTTTGTGACTGTTTCTGTGACACAACCAACCCCTCTTTCCATCACAACAATTCATGCCATTCTTTCCTTCTCTTCAAATGATACCCTCACCAAGTTCACCTTTCAGTTTAACAATGGTCAAACATGGATCCTATATGCTTCTTCCCCAATCAAGTTGAGCCATGGCAATTCTGAGATCACTTCTGAGGCTTTCTCTGGCATAGTTCGGATTGCGTTGTTGCCGGATTCCGATCCGAAACACAAGGCTGTTCTTGACAAGTTCAGTTCTTGTTATCCTGTGTCAGGTGATGCTGTGTTGAGAGAACCATTTAGTTTGGAGTATAAGTGGGAGAAGAAAGGGTCAGGGGAATTGCTACTATTAGCACACCCTCTCCATATTCAGCTATTGTCTAATAACAGTGACAGTGATGTCACTGTTTTGGGTGATTTTAAGTACACAAGCATTGATGGGGATCTTGTTGGTGTTGTTGGAGATTCATGGATTCTGAAAGCAAATCCTGTTTCTGTAACATGGCATTCAACCAGGGGTGTGAAAGATGAATCGCGCGNNGAAATAGTTTCAGCGCTTTCTAAGGATGTTGANGCTCTAAATTCATCAGCAATAACAACAACATCCTCTTACTTTTATGGGAAATTGATTGCAAGGGCTGCAAGGTTGGCATTGATAGCTGAAGAGGTTTTCTTCTTTGATGTGATCCCAAAGGTTAGGAANTTTTTGAAGGAAACCATTGAGCCTTGGCTTGAAGGGACTTTCAATGGGAATGGATTTCTATATGATAATAAATGGGGAGGCATNATTACCAAACAAGGGTCTACTGATTCTGGTGGTGATTTTGGTTTTGGAATTTACAACGATCACCATTATCACTTGGGGTACTTTCTCTATGGAATTGCAGTGCTTGCTAAGATTGATCCAGCTTGGGGTAAAAAGTATAAGCCTAAAGCCTATTCTCTAATGGAAGATTTCATGAACTTGAGCACAAGATCAAACTCNAATTACACGCGTTTGAGGTGTTTNGATCTTTACAAGTTGCATTCTTGGGCTGGAGGGTTAACNGAGTTCACAGATGGAAGAAATCAAGAGAGCACTAGTGAAGCTATAAATGCATATTATTCTGCTGCCTTGATGGGTATGGCATATGGTGATGCCAATCTTGTTGCCATTGGATCAACACTAACAGCATTGGAGATTCTTGGAACTCAAATGTGGTGGCATGTGAAAGANGGAGGGAATCTCTATGAGGAAGATTTTACAAAAGAGAACAGGATCATGGGAGTTTTGTGGTCTAACAAGAGAGATAGTGGACTTTGGTTTGCTGCTGCTGAGTTGAGAGAAGCTAGGCTTGGAATNCANCTCTTACCATTGCTTCCTATTTCTGAAGTTGTGTTCTCCAATGTTGANTATGTGAAGGATCTTGTGGAGTGGACNTTNCCTGCTTTGAAAAGGGATGGTGTTGCTGAAGGATGGAAGGGNTTTGTGTATGCCNTNCAAGGAGTTTANGATAATGAAGGTGCANTGCAGAAGATCAAAAGCTTGAAAGGTTTTGATGGTGGGAACTCATTGACTAATCTCTTGTGGTGGATTCACAGCAGAGGTGAAGGTGANGATGCTGAGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00511	36079	38106	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH81

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016998 cell wall macromolecule catabolic process

molecular_function

GO:0052861 glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group

GO:0052862 glucan endo-1,4-beta-glucanase activity, C-3 substituted reducing group

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000511s00022045.1	PF03639.8	Glyco_hydro_81	13	668	1.00E-203

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.693
SRR1783600	control	2.815
SRR1783602	moderate drought stress	0.766
SRR1811619	moderate drought stress	0.658

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.971
DRR006520	Root Summer glycyrrhizin high producing strain	4.146
DRR006521	Root Winter glycyrrhizin high producing strain	1.567
DRR006522	Root Winter glycyrrhizin high producing strain	1.522
DRR006523	Root Summer glycyrrhizin low producing strain	13.619
DRR006524	Root Summer glycyrrhizin low producing strain	13.073
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.991
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.880

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	76.914
SRR2868004	Drought Stress (root)	142.466
SRR2967015	Control (root)	126.928

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.837
SRR9715740	Leaf	0.170
SRR9715741	Leaf	1.656
SRR9715739	Root	2.339
SRR9715742	Root	18.188
SRR9715743	Root	17.744

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.719
SRR8749028	MeJA induced 9h	8.123
SRR8749029	MeJA induced 9h	4.351
SRR8749030	Uninduced	9.140
SRR8749031	Uninduced	16.851
SRR8749032	Uninduced	7.408

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	32.303
SRR8400027	Control - Root	26.707