Gene detail

Gene detail information of Glyur000509s00016415.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G17980.1	0	poly(A) polymerase 1
NR	XP_004512881.1	0	PREDICTED: poly(A) polymerase-like [Cicer arietinum]
COG	YP_007058509.1	2.00E-40	poly(A) polymerase [Rivularia sp. PCC 7116]
Swissprot	tr\|Q9LMT2\|PAPS1_ARATH	0	Nuclear poly(A) polymerase 1 {ECO:0000303\|PubMed:18479511}
trEMBL	tr\|I1L486\|I1L486_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G31080.1}

Sequence

Transcript Sequence

>Glyur000509s00016415.1
GTTCTTCTTCCAGCAGATAGCTGTTTCCAGAGCCATATCCACCCTCTTCCTTCCTCTCCCTTTTGGGGGCTCGATTCAATCCAACCATCGTGGGAGTGCTACATTCGCCTACACCCTCTAGATAGAATTCATCAAGTTGAAGCCTTTCTCCGGTTCTGATCGTGTGCCACACATCTTTGTTCATCTGGGGTGTCGCGATTTCTCGGTGCTGATTTAGGGTTTGCGGTTTTTTGATTCCAAGTTGAGAAGAAGCCCTAATTTGAAGCTCTGTACTCTGCCCTTGTTCTAATTTTTTTTTTGTGCAATGAAATTTGTTCTGGGTGGCTTTGTAATTTCTCACCCTTTTGTTCCTTCATGTTTTTATGGTCAAAGTTCATAGCTTTGAACGTTTCGGCCAAATACTGTACAATCAACAATTATCATCGCATTGTTATAGTGTGTGTGTTTTTTTTCTTTCCCTTTCTGTTTCATCTTGTTTTTATTTGATTTTATTGGGAAGAAAGACTGAAAAAAAAAATTCACCAGTAACTGAAAATTCTCATTGAAACAAAAGATATCATACTATAATTAGAGGAAAAAAAGGGGAAAAAAACTGTGCCAATTTGTTCATGGGGATCCCTGGATTGAGCAATCACAATAATGGGCAGCAAAGGTTAGGCATAACCGAGCCGATTTCATTGGCTGGACCAACTGAGGATGATGTGATCAAGACCCGTGAACTTGAGAAGTACTTGCAAGGTGCTGGATTGTATGAGAGTCAGCAGGAGGCAGTGGGTAGGGAGGAAATTGTGAAGATCTGGGTTAAAACCATAAGCCGGGCAAAGGGATTTAATGAACAACTGGTGCACGAAGCAAATGCTAAAATTTTCACTTTTGGCTCCTATCGACTAGGGGTGCATGGCCCTGGAGCTGATATAGATACTCTTTGTGTGGGACCTAGACATGCAACCAGAGACGAAGATTTCTTTGGTGAGCTACGTAAGATGCTATCTGAGATGGAGGAAGTAACAGAATTGCACCCTGTGCCTGATGCACATGTCCCTGTGATGAAATTCAAGTTCAATGGAGTTTCTGTAGATCTCCTGTATGCAAGATTGGCATTGTGGGTTATTCCTGAAGACTTAGATATATCACAGGAATCAATATTACAAAATGCAGATGAACAAACTGTTCTCAGTCTTAATGGTTGTAGAGTAACTGATCAAGTCCTGCGTTTAGTTCCAAATATTCAGGTNGTGGATAATTTTCGTACAACATTGAGATGCATGAGGTTTTGGGCAAAGCGTCGTGGTGTTTATTCAAATGTTACAGGTTTTCTTGGTGGTATAAACCTGGCATTGCTTGTTGCTCGAATATGCCAGCTATATCCTAATGCACTGCCTAATATGTTGGTGTCTCGATTCTTTAGGGTATATACTCAATGGCGATGGCCAAATCCAGTCATGCTTTGTGCTATTGAAGAAGGATCTCTTGGACTACCGGTTTGGGATCCTAGAAGAAATCGCAAGGATAGATTTCATCTAATGCCTATAATTACTCCTGCTTATCCTTGCATGAACTCTACTTACAATGTGACAGCAAGTACACTGCGCATTATGTCAGAGGAGTTTAAGAGGGGAAGTGAAATATGTGAGGCTATGGAGGCTAGCAAGGCTGATTGGGATAATCTTTTTGAGCCATACCCCTTTTTCGAAGCTTACAAGAATTACCTACAGATAGACATTACAGCACAGAATGCAGACGACCTCAGACAATGGAAAGGATGGGTTGAGTCTCGTCTCCGCCAGTTAACATTGAGGATCGAGAGGCACACTTTTGGTATGCTTCAGTGTCACCCACATCCTGGTGAATTTTCAGACAAATCTAGACCTTTCCACCACTGTTACTTCATGGGTCTGCAGCGTAAGCAAGGAGTTCCGGTGAATGAAGGTGAACAATTTGATATAAGGATAACTGTTGACGAATTTAAGCATTCTGTCAACGCGTACACTCTATGGAAACCTGGAATGGATATCCACGTCTCCCATGTGAAACGCCGTAACATACCTAAATTCATATTCCCCGGTGGTGTCCGACCTTCCTGCCCATCTAAAGTAACTTGGGATCATAAGCAAAGTTCCAAATCAAAGGCTTCTGGCCAAGGTCAAGCTGAAAAATCTCAAGGAGGTAAAGCGGTTGTGTCTGGATCAGATGATGCGAGGAAGAGAAAGCGATCAGAGGACAGCATGGATAATAACAATGACTTGAGGAATTCAAAGTCTTCTGTATCTTTATCCCCTCCCAACAAGGAAGTTCACGAAGATAGAACTCTTATTAGCGCTACTNGTTCTTGTTCTATGAAATTTGATGACTCCGAAGTCAACAGTATGGGCACGCAAAAGAGTGAAAAACCTTGCGTGAAATCTTCGGGGGAGATTCCTTCTGGTGATGGTGAAACCAATGGATCAGTGATGGGCAACCAACAAGTGAACCCTATACTTACTGCTCCTGNTGCATCTAATTCTAAAGAAGAAGAAAGACTAGCCATCGAGCAGATTATGTCCGGTCCGTATGATGGGCATCACACCTTAGCAGAAGAGCCTGATGAGCTTGGAGATGATATTGCAGATAGAAATCAAGTCAAAGATTCTGGTGGGGACATGAANATCAACGACATTGACTCTTCAAACTCAAAGTCTGCAGTAGCAGAAGAGCCAGTTATTTCTAAGGAAAGTGCNTGTTCAACTCATTTATGCTNTAATGGNGTCTTGGAGGAGCTTGAGCCTGCTGAGTTGACAGTACCATTGTTTTGTGGGACTCCTGCTCCTGTACCGCAGCGGAAGCCTCTTATCAGGTTGAACTTCACCTCCTTNGGGAAAGCAGCAGATAAAAGTTCTTGAAGACACTCTGAAAGCTTAAGCTGCAGCTTGCAGAAACTGTAAAATAGTCGTTTCTAGCTCCTTTGTTTCTCTTTGTAACAATTTTGATGAAGGAAATAATCGATCCTGAGCTAGAAAAGCTAGCCATCAACTTTTTTCCTATATATATGTACATGAGAATATGTTGCACCGGCAAAAATAAAAAAATAGATTATGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00509	122082	129162	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14376	PAP	EC:2.7.7.19	mRNA surveillance pathway	map03015

Gene Ontology

biological_process

GO:0031123 RNA 3'-end processing

GO:0043631 RNA polyadenylation

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003723 RNA binding

GO:0004652 polynucleotide adenylyltransferase activity

GO:0016779 nucleotidyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000509s00016415.1	PF04928.12	PAP_central	14	358	2.40E-98
Glyur000509s00016415.1	PF01909.18	NTP_transf_2	70	150	6.20E-09
Glyur000509s00016415.1	PF04926.10	PAP_RNA-bind	359	490	5.00E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.612
SRR1783600	control	13.614
SRR1783602	moderate drought stress	18.178
SRR1811619	moderate drought stress	17.842

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.158
DRR006520	Root Summer glycyrrhizin high producing strain	19.882
DRR006521	Root Winter glycyrrhizin high producing strain	21.437
DRR006522	Root Winter glycyrrhizin high producing strain	20.997
DRR006523	Root Summer glycyrrhizin low producing strain	17.504
DRR006524	Root Summer glycyrrhizin low producing strain	16.997
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.745
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.128

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	29.267
SRR2868004	Drought Stress (root)	27.171
SRR2967015	Control (root)	31.885

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.159
SRR9715740	Leaf	23.038
SRR9715741	Leaf	30.837
SRR9715739	Root	6.707
SRR9715742	Root	24.133
SRR9715743	Root	22.042

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.765
SRR8749028	MeJA induced 9h	24.988
SRR8749029	MeJA induced 9h	20.558
SRR8749030	Uninduced	20.603
SRR8749031	Uninduced	28.048
SRR8749032	Uninduced	27.760

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.291
SRR8400027	Control - Root	32.061