Gene detail

Gene detail information of Glyur000509s00016404

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G52450.1	2.00E-145	MATE efflux family protein
NR	AES76569.2	0	MATE efflux family protein [Medicago truncatula]
COG	YP_003264696.1	2.00E-30	MATE efflux family protein [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q8GXM8\|MATE7_ARATH	6.00E-108	MATE efflux family protein 7
trEMBL	tr\|G7KM48\|G7KM48_MEDTR	0	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}

Sequence

Transcript Sequence

>Glyur000509s00016404.1
ATTTCTCTTTCTGCAGCTTCGCGTGTGTGTGTGTGTGTGTGTGTGGAAGTGAGAAGAGAAATGGAGAGAGAACAAGAAACCCCATCTCTCCATTCTCCCTTGATTGTTCACAACTCAGAAGAAATTGTTGATGAAAAGCAAATAAATTCAGATTCAACAATAGGAAGAAGTGAAGTTGTGGAAGAAGTGAAGAAGCAGTTATGGCTAGCAGGGCCATTGGTATCTGTCACTCTGCTGAATTTCTGTCTAAGTGTCATCTCTGTNATGTATGTGGGACATCTTGGCGAGTTGGCTCTCTCTGGTGCTTCCATGGCCACTTCTTTTGCCAGTGTCACAGGNTTCAGTTTATTGTCATATGGAGCAAAGCAGTACCGTATGTTAGGCATACACATGCAAAGAGCCATGCTCATTCTCATGATTGTCAGCATTCCTCTTGCAGTTATTTGGGCTAACACAAGATCCATCCTCATTTTCCTTGGCCAAGATCCGGAAATATCTACAGAAGCCGGTAACTATGCTAAGTTAATGATTCCATGCATTTTCGGTTATGGCCTTCTCCAGTGCCTCAACAGATTCTTGCAAAACCAGAACATTGTATTTCCAATGATGTTAAGCTCCGCGGTGACGACTTCACTACATCTGCTTATATGTTGGTTCATGGTATACAAGTCTGGACTAGGGAGCAGCGGGGCCGCCGTAGCGAATTCTATATCTTACTGGCTGAATGTTACCATACTCGTACTCTATGTCAACTTGGAAATGTGGTCATTTGAATTGATGGTTCTCCTNTCCGGTCTTCTTCCGAATCCAAAGTTGGAAACATCNGTGCTTTCTATCTGCTTGAATACATCAGCAGCTGCTTGGATGATCCCCTTTGGACTCAGTGGAGCTGTGAGTATCCGTGTCTCNAATGAACTTGGAGCCGGTCATCCATGGGCTGCGCGTTTGGCAGTGCGTGTTGTCTTAGTGATNGCCATTATTGAGGGCGTCTTAGTTGGAACGTTGATGATGCTAGTACGCAATATATGGGGCTATGCTTATAGCAATGAAGTAGAAGTGGTCAAATATGTAGCAACTATGTTGCCAATTCTTGCAGCATCCAACTTTCTGGATGGACTCCAATGTGTTCTTTCAGGGACTGCTAGAGGATGTGGTTGGCAGAAAATCGGTGCATTTGTCAATCTAGGGTCATACTATTTAGTTGGGATTCCAGCAGCCGTCGGGCTGTGGTTGGGGATAATATGTGCACTCATTGTTCAAGTACTTTCACTATGGATCATTACTATACGTACTAATTGGGAGCAACAGGCAAAGAAGGCTACAGATAGAGTCTATAGCTCAGCAACGCAAGAGAGCTTAGTCTCATGAAGATTATGATTTTTGTTTTACATTTTTTAATGTGTTGATAGGGGAATATCTTGGATGTTATATGGAGGGAAGAGAAGAAAATGTGCTGCGTTTAAAAGTTATTAAATGTGAATTCGATCCAAGTTAATTGAACTTTGTTTATAGCCCCTGAAGCAAGATATTGGCTGGACTCTCCCTCAAAAATAAATATAAATAAATAAGCAAATGAACAATCCAATAATATCAAGTGGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00509	58852	63515	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006855 drug transmembrane transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0015238 drug transmembrane transporter activity

GO:0015297 antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000509s00016404.1	PF01554.13	MatE	52	198	3.10E-19
Glyur000509s00016404.1	PF01554.13	MatE	232	386	2.10E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.431
SRR1783600	control	1.417
SRR1783602	moderate drought stress	1.646
SRR1811619	moderate drought stress	1.758

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.824
DRR006520	Root Summer glycyrrhizin high producing strain	1.878
DRR006521	Root Winter glycyrrhizin high producing strain	2.914
DRR006522	Root Winter glycyrrhizin high producing strain	2.740
DRR006523	Root Summer glycyrrhizin low producing strain	3.576
DRR006524	Root Summer glycyrrhizin low producing strain	3.342
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.797
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.932
SRR2868004	Drought Stress (root)	10.916
SRR2967015	Control (root)	11.254

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.839
SRR9715740	Leaf	10.600
SRR9715741	Leaf	19.369
SRR9715739	Root	2.191
SRR9715742	Root	1.734
SRR9715743	Root	2.457

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	91.455
SRR8749028	MeJA induced 9h	108.244
SRR8749029	MeJA induced 9h	148.734
SRR8749030	Uninduced	17.729
SRR8749031	Uninduced	9.225
SRR8749032	Uninduced	14.614

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.808
SRR8400027	Control - Root	8.398